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Science 1 August 2003:
Vol. 301. no. 5633, pp. 653 - 657
DOI: 10.1126/science.1086391
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Reports

Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana

José M. Alonso,1* Anna N. Stepanova,1* Thomas J. Leisse,1 Christopher J. Kim,1 Huaming Chen,1 Paul Shinn,1 Denise K. Stevenson,1 Justin Zimmerman,1 Pascual Barajas,1 Rosa Cheuk,1 Carmelita Gadrinab,1 Collen Heller,1 Albert Jeske,1 Eric Koesema,1 Cristina C. Meyers,1 Holly Parker,1 Lance Prednis,1 Yasser Ansari,1 Nathan Choy,1 Hashim Deen,1 Michael Geralt,1 Nisha Hazari,1 Emily Hom,1 Meagan Karnes,1 Celene Mulholland,1 Ral Ndubaku,1 Ian Schmidt,1 Plinio Guzman,1 Laura Aguilar-Henonin,1 Markus Schmid,1{dagger} Detlef Weigel,1{dagger} David E. Carter,2 Trudy Marchand,2 Eddy Risseeuw,2 Debra Brogden,2 Albana Zeko,2 William L. Crosby,2 Charles C. Berry,3 Joseph R. Ecker1{ddagger}

Over 225,000 independent Agrobacterium transferred DNA (T-DNA) insertion events in the genome of the reference plant Arabidopsis thaliana have been created that represent near saturation of the gene space. The precise locations were determined for more than 88,000 T-DNA insertions, which resulted in the identification of mutations in more than 21,700 of the ~29,454 predicted Arabidopsis genes. Genome-wide analysis of the distribution of integration events revealed the existence of a large integration site bias at both the chromosome and gene levels. Insertion mutations were identified in genes that are regulated in response to the plant hormone ethylene.

1 Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
2 National Research Council Plant Biotechnology Institute, Saskatoon, SK, S7N 0W9 Canada.
3 Department of Family/Preventive Medicine, University of California, San Diego, CA 92093, USA.



* Present address: Department of Genetics, Box 7614, North Carolina State University, Raleigh, NC 27695, USA.

{dagger} Present address: Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstrasse 37-39, D-72076 Tübingen, Germany.

{ddagger} To whom correspondence should be addressed. E-mail: ecker{at}salk.edu

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Plant Physiology 148, 1603-1613
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Comparative Analyses of Arabidopsis complex glycan1 Mutants and Genetic Interaction with staurosporin and temperature sensitive3a.
J. Frank, H. Kaulfurst-Soboll, S. Rips, H. Koiwa, and A. von Schaewen (2008)
Plant Physiology 148, 1354-1367
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AtCCX3 Is an Arabidopsis Endomembrane H+-Dependent K+ Transporter.
J. Morris, H. Tian, S. Park, C. S. Sreevidya, J. M. Ward, and K. D. Hirschi (2008)
Plant Physiology 148, 1474-1486
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Subclade of Flavin-Monooxygenases Involved in Aliphatic Glucosinolate Biosynthesis.
J. Li, B. G. Hansen, J. A. Ober, D. J. Kliebenstein, and B. A. Halkier (2008)
Plant Physiology 148, 1721-1733
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Transcriptional Profiling of Mature Arabidopsis Trichomes Reveals That NOECK Encodes the MIXTA-Like Transcriptional Regulator MYB106.
M. J. Jakoby, D. Falkenhan, M. T. Mader, G. Brininstool, E. Wischnitzki, N. Platz, A. Hudson, M. Hulskamp, J. Larkin, and A. Schnittger (2008)
Plant Physiology 148, 1583-1602
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Further Evidence for the Mandatory Nature of Polysaccharide Debranching for the Aggregation of Semicrystalline Starch and for Overlapping Functions of Debranching Enzymes in Arabidopsis Leaves.
F. Wattebled, V. Planchot, Y. Dong, N. Szydlowski, B. Pontoire, A. Devin, S. Ball, and C. D'Hulst (2008)
Plant Physiology 148, 1309-1323
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A membrane-tethered transcription factor defines a branch of the heat stress response in Arabidopsis thaliana.
H. Gao, F. Brandizzi, C. Benning, and R. M. Larkin (2008)
PNAS 105, 16398-16403
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From the Cover: Regulation of floral organ abscission in Arabidopsis thaliana.
S. K. Cho, C. T. Larue, D. Chevalier, H. Wang, T.-L. Jinn, S. Zhang, and J. C. Walker (2008)
PNAS 105, 15629-15634
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Association of the Agrobacterium T-DNA-protein complex with plant nucleosomes.
B. Lacroix, A. Loyter, and V. Citovsky (2008)
PNAS 105, 15429-15434
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Purification, molecular cloning, and characterization of glutathione S-transferases (GSTs) from pigmented Vitis vinifera L. cell suspension cultures as putative anthocyanin transport proteins.
S. Conn, C. Curtin, A. Bezier, C. Franco, and W. Zhang (2008)
J. Exp. Bot. 59, 3621-3634
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Arabidopsis thaliana Has a Set of J Proteins in the Endoplasmic Reticulum that are Conserved from Yeast to Animals and Plants.
M. Yamamoto, D. Maruyama, T. Endo, and S.-i. Nishikawa (2008)
Plant Cell Physiol. 49, 1547-1562
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The Glycerophosphoryl Diester Phosphodiesterase-Like Proteins SHV3 and its Homologs Play Important Roles in Cell Wall Organization.
S. Hayashi, T. Ishii, T. Matsunaga, R. Tominaga, T. Kuromori, T. Wada, K. Shinozaki, and T. Hirayama (2008)
Plant Cell Physiol. 49, 1522-1535
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IMPa-4, an Arabidopsis Importin {alpha} Isoform, Is Preferentially Involved in Agrobacterium-Mediated Plant Transformation.
S. Bhattacharjee, L.-Y. Lee, H. Oltmanns, H. Cao, Veena, J. Cuperus, and S. B. Gelvin (2008)
PLANT CELL 20, 2661-2680
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