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Science 1 August 2003:
Vol. 301. no. 5633, pp. 653 - 657
DOI: 10.1126/science.1086391
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Reports

Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana

José M. Alonso,1* Anna N. Stepanova,1* Thomas J. Leisse,1 Christopher J. Kim,1 Huaming Chen,1 Paul Shinn,1 Denise K. Stevenson,1 Justin Zimmerman,1 Pascual Barajas,1 Rosa Cheuk,1 Carmelita Gadrinab,1 Collen Heller,1 Albert Jeske,1 Eric Koesema,1 Cristina C. Meyers,1 Holly Parker,1 Lance Prednis,1 Yasser Ansari,1 Nathan Choy,1 Hashim Deen,1 Michael Geralt,1 Nisha Hazari,1 Emily Hom,1 Meagan Karnes,1 Celene Mulholland,1 Ral Ndubaku,1 Ian Schmidt,1 Plinio Guzman,1 Laura Aguilar-Henonin,1 Markus Schmid,1{dagger} Detlef Weigel,1{dagger} David E. Carter,2 Trudy Marchand,2 Eddy Risseeuw,2 Debra Brogden,2 Albana Zeko,2 William L. Crosby,2 Charles C. Berry,3 Joseph R. Ecker1{ddagger}

Over 225,000 independent Agrobacterium transferred DNA (T-DNA) insertion events in the genome of the reference plant Arabidopsis thaliana have been created that represent near saturation of the gene space. The precise locations were determined for more than 88,000 T-DNA insertions, which resulted in the identification of mutations in more than 21,700 of the ~29,454 predicted Arabidopsis genes. Genome-wide analysis of the distribution of integration events revealed the existence of a large integration site bias at both the chromosome and gene levels. Insertion mutations were identified in genes that are regulated in response to the plant hormone ethylene.

1 Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
2 National Research Council Plant Biotechnology Institute, Saskatoon, SK, S7N 0W9 Canada.
3 Department of Family/Preventive Medicine, University of California, San Diego, CA 92093, USA.



* Present address: Department of Genetics, Box 7614, North Carolina State University, Raleigh, NC 27695, USA.

{dagger} Present address: Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstrasse 37-39, D-72076 Tübingen, Germany.

{ddagger} To whom correspondence should be addressed. E-mail: ecker{at}salk.edu

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PLANT CELL 21, 972-984
   Abstract »    Full Text »    PDF »
A Chloroplastic UDP-Glucose Pyrophosphorylase from Arabidopsis Is the Committed Enzyme for the First Step of Sulfolipid Biosynthesis.
Y. Okazaki, M. Shimojima, Y. Sawada, K. Toyooka, T. Narisawa, K. Mochida, H. Tanaka, F. Matsuda, A. Hirai, M. Y. Hirai, et al. (2009)
PLANT CELL 21, 892-909
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The Gene Controlling the Indole Glucosinolate Modifier1 Quantitative Trait Locus Alters Indole Glucosinolate Structures and Aphid Resistance in Arabidopsis.
M. Pfalz, H. Vogel, and J. Kroymann (2009)
PLANT CELL 21, 985-999
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Pheophytin Pheophorbide Hydrolase (Pheophytinase) Is Involved in Chlorophyll Breakdown during Leaf Senescence in Arabidopsis.
S. Schelbert, S. Aubry, B. Burla, B. Agne, F. Kessler, K. Krupinska, and S. Hortensteiner (2009)
PLANT CELL 21, 767-785
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Methyl Salicylate Production and Jasmonate Signaling Are Not Essential for Systemic Acquired Resistance in Arabidopsis.
E. Attaran, T. E. Zeier, T. Griebel, and J. Zeier (2009)
PLANT CELL 21, 954-971
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Chloroplast NADPH-Thioredoxin Reductase Interacts with Photoperiodic Development in Arabidopsis.
A. Lepisto, S. Kangasjarvi, E.-M. Luomala, G. Brader, N. Sipari, M. Keranen, M. Keinanen, and E. Rintamaki (2009)
Plant Physiology 149, 1261-1276
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The Signal Peptide Peptidase Is Required for Pollen Function in Arabidopsis.
S. Han, L. Green, and D. J. Schnell (2009)
Plant Physiology 149, 1289-1301
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Temporal Global Expression Data Reveal Known and Novel Salicylate-Impacted Processes and Regulators Mediating Powdery Mildew Growth and Reproduction on Arabidopsis.
D. Chandran, Y. C. Tai, G. Hather, J. Dewdney, C. Denoux, D. G. Burgess, F. M. Ausubel, T. P. Speed, and M. C. Wildermuth (2009)
Plant Physiology 149, 1435-1451
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Science. ISSN 0036-8075 (print), 1095-9203 (online)