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Science 13 June 2003: Vol. 300. no. 5626, pp. 1742 - 1745 DOI: 10.1126/science.1085881
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Reports
Sex-Dependent Gene Expression and Evolution of the Drosophila Transcriptome
José M. Ranz,
Cristian I. Castillo-Davis,
Colin D. Meiklejohn,
Daniel L. Hartl*
Comparison of the gene-expression profiles between adults of Drosophila melanogaster and Drosophila simulans has uncovered the evolution of genes that exhibit sex-dependent regulation. Approximately half the genes showed differences in expression between the species, and among these,  83% involved a gain, loss, increase, decrease, or reversal of sex-biased expression. Most of the interspecific differences in messenger RNA abundance affect male-biased genes. Genes that differ in expression between the species showed functional clustering only if they were sex-biased. Our results suggest that sex-dependent selection may drive changes in expression of many of the most rapidly evolving genes in the Drosophila transcriptome.
Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.
* To whom correspondence should be addressed. E-mail: dhartl{at}oeb.harvard.edu
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- M. E Cummings, J. Larkins-Ford, C. R.L Reilly, R. Y Wong, M. Ramsey, and H. A Hofmann (2008)
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- M. L. Wayne, M. Telonis-Scott, L. M. Bono, L. Harshman, A. Kopp, S. V. Nuzhdin, and L. M. McIntyre (2007)
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| Full Text »
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| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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- P. Ma, C. I. Castillo-Davis, W. Zhong, and J. S. Liu (2006)
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| Abstract »
| Full Text »
| PDF »
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- B.-Y. Liao and J. Zhang (2006)
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| Abstract »
| Full Text »
| PDF »
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- M. A. Sartor, A. M. Zorn, J. A. Schwanekamp, D. Halbleib, S. Karyala, M. L. Howell, G. E. Dean, M. Medvedovic, and C. R. Tomlinson (2006)
Nucleic Acids Res.
34, 185-200
| Abstract »
| Full Text »
| PDF »
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- J. Wang, L. Tian, H.-S. Lee, N. E. Wei, H. Jiang, B. Watson, A. Madlung, T. C. Osborn, R. W. Doerge, L. Comai, et al. (2006)
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| Abstract »
| Full Text »
| PDF »
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- M. Ashburner and C. M. Bergman (2005)
Genome Res.
15, 1661-1667
| Abstract »
| Full Text »
| PDF »
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- M. Vuylsteke, F. van Eeuwijk, P. Van Hummelen, M. Kuiper, and M. Zabeau (2005)
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| Abstract »
| Full Text »
| PDF »
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- B. J. Wagstaff and D. J. Begun (2005)
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171, 1083-1101
| Abstract »
| Full Text »
| PDF »
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- Z. Zhang and J. Parsch (2005)
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22, 1945-1947
| Abstract »
| Full Text »
| PDF »
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- D. J. Begun and H. A. Lindfors (2005)
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22, 2010-2021
| Abstract »
| Full Text »
| PDF »
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- J. L. Mueller, K. R. Ram, L. A. McGraw, M. C. Bloch Qazi, E. D. Siggia, A. G. Clark, C. F. Aquadro, and M. F. Wolfner (2005)
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171, 131-143
| Abstract »
| Full Text »
| PDF »
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- S. Jagadeeshan and R. S. Singh (2005)
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22, 1793-1801
| Abstract »
| Full Text »
| PDF »
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- T. M. Hambuch and J. Parsch (2005)
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170, 1691-1700
| Abstract »
| Full Text »
| PDF »
- Sex-linked Correlated Responses in Female Reproductive Traits to Selection on Male Eye Span in Stalk-eyed Flies.
- G. S. Wilkinson, E. G. Amitin, and P. M. Johns (2005)
Integr. Comp. Biol.
45, 500-510
| Abstract »
| Full Text »
| PDF »
- Genetics and genomics of Drosophila mating behavior.
- T. F. C. Mackay, S. L. Heinsohn, R. F. Lyman, A. J. Moehring, T. J. Morgan, and S. M. Rollmann (2005)
PNAS
102, 6622-6629
| Abstract »
| Full Text »
| PDF »
- Genomes, phylogeny, and evolutionary systems biology.
- M. Medina (2005)
PNAS
102, 6630-6635
| Abstract »
| Full Text »
| PDF »
- Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles.
- Y. Gilad, S. A. Rifkin, P. Bertone, M. Gerstein, and K. P. White (2005)
Genome Res.
15, 674-680
| Abstract »
| Full Text »
| PDF »
- Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions.
- B. Lemos, B. R. Bettencourt, C. D. Meiklejohn, and D. L. Hartl (2005)
Mol. Biol. Evol.
22, 1345-1354
| Abstract »
| Full Text »
| PDF »
- Mapping Multiple Quantitative Trait Loci by Bayesian Classification.
- M. Zhang, K. L. Montooth, M. T. Wells, A. G. Clark, and D. Zhang (2005)
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169, 2305-2318
| Abstract »
| Full Text »
| PDF »
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- B. J. Wagstaff and D. J. Begun (2005)
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22, 818-832
| Abstract »
| Full Text »
| PDF »
- Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species.
- T. Le Gall, P. Darlu, P. Escobar-Paramo, B. Picard, and E. Denamur (2005)
Genome Res.
15, 260-268
| Abstract »
| Full Text »
| PDF »
- Additivity and trans-acting Effects on Gene Expression in Male Drosophila simulans.
- M. L. Wayne, Y.-J. Pan, S. V. Nuzhdin, and L. M. McIntyre (2004)
Genetics
168, 1413-1420
| Abstract »
| Full Text »
| PDF »
- Molecular Evolution of Sex-Biased Genes in Drosophila.
- Z. Zhang, T. M. Hambuch, and J. Parsch (2004)
Mol. Biol. Evol.
21, 2130-2139
| Abstract »
| Full Text »
| PDF »
- Molecular Evolution and Population Genetics of Duplicated Accessory Gland Protein Genes in Drosophila.
- A. K. Holloway and D. J. Begun (2004)
Mol. Biol. Evol.
21, 1625-1628
| Abstract »
| Full Text »
| PDF »
- Sex-Specific Effects of Interventions That Extend Fly Life Span.
- J. M. S. Burger and D. E. L. Promislow (2004)
Sci. Aging Knowl. Environ.
2004, pe30
| Abstract »
| Full Text »
- Common Pattern of Evolution of Gene Expression Level and Protein Sequence in Drosophila.
- S. V. Nuzhdin, M. L. Wayne, K. L. Harmon, and L. M. McIntyre (2004)
Mol. Biol. Evol.
21, 1308-1317
| Abstract »
| Full Text »
| PDF »
- Genome-wide transcription profile of field- and laboratory-selected dichlorodiphenyltrichloroethane (DDT)-resistant Drosophila.
- J. H. F. Pedra, L. M. McIntyre, M. E. Scharf, and B. R. Pittendrigh (2004)
PNAS
101, 7034-7039
| Abstract »
| Full Text »
| PDF »
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- H. Sundstrom, M. T. Webster, and H. Ellegren (2004)
Genetics
167, 377-385
| Abstract »
| Full Text »
| PDF »
- A genomic analysis of Drosophila somatic sexual differentiation and its regulation.
- M. N. Arbeitman, A. A. Fleming, M. L. Siegal, B. H. Null, and B. S. Baker (2004)
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131, 2007-2021
| Abstract »
| Full Text »
| PDF »
- Anomalies in the Expression Profile of Interspecific Hybrids of Drosophila melanogaster and Drosophila simulans.
- J. M. Ranz, K. Namgyal, G. Gibson, and D. L. Hartl (2004)
Genome Res.
14, 373-379
| Abstract »
| Full Text »
| PDF »
- Extensive Gene Traffic on the Mammalian X Chromosome.
- J. J. Emerson, H. Kaessmann, E. Betran, and M. Long (2004)
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303, 537-540
| Abstract »
| Full Text »
| PDF »
- Rapid evolution of male-biased gene expression in Drosophila.
- C. D. Meiklejohn, J. Parsch, J. M. Ranz, and D. L. Hartl (2003)
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100, 9894-9899
| Abstract »
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