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Science 30 May 2003: Vol. 300. no. 5624, pp. 1439 - 1443 DOI: 10.1126/science.1083516
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Reports
Characterization of Mammalian Selenoproteomes
Gregory V. Kryukov,1
Sergi Castellano,2
Sergey V. Novoselov,1
Alexey V. Lobanov,1
Omid Zehtab,1
Roderic Guigó,2
Vadim N. Gladyshev1*
In the genetic code, UGA serves as a stop signal and a selenocysteine codon, but no computational methods for identifying its coding function are available. Consequently, most selenoprotein genes are misannotated. We identified selenoprotein genes in sequenced mammalian genomes by methods that rely on identification of selenocysteine insertion RNA structures, the coding potential of UGA codons, and the presence of cysteine-containing homologs. The human selenoproteome consists of 25 selenoproteins.
1 Department of Biochemistry, University of Nebraska, Lincoln, NE 685880664, USA.
2 Grup de Recerca en Informàtica Biomèdica, Institut Municipal d'Investigació Mèdica, Universitat Pompeu Fabra, Centre de Regulació Genòmica, Doctor Aiguader 80, 08003 Barcelona, Catalonia, Spain.
* To whom correspondence should be addressed. E-mail: vgladyshev1{at}unl.edu
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- A. V. Lobanov, C. Delgado, S. Rahlfs, S. V. Novoselov, G. V. Kryukov, S. Gromer, D. L. Hatfield, K. Becker, and V. N. Gladyshev (2006)
Nucleic Acids Res.
34, 496-505
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- A periodic pattern of mRNA secondary structure created by the genetic code..
- S. A. Shabalina, A. Y. Ogurtsov, and N. A. Spiridonov (2006)
Nucleic Acids Res.
34, 2428-2437
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- Sequence-based heuristics for faster annotation of non-coding RNA families.
- Z. Weinberg and W. L. Ruzzo (2006)
Bioinformatics
22, 35-39
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- Evidence for Direct Roles of Two Additional Factors, SECp43 and Soluble Liver Antigen, in the Selenoprotein Synthesis Machinery.
- X.-M. Xu, H. Mix, B. A. Carlson, P. J. Grabowski, V. N. Gladyshev, M. J. Berry, and D. L. Hatfield (2005)
J. Biol. Chem.
280, 41568-41575
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- Selenium, the Thyroid, and the Endocrine System.
- J. Kohrle, F. Jakob, B. Contempre, and J. E. Dumont (2005)
Endocr. Rev.
26, 944-984
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- Characterization of an Iodothyronine 5'-Deiodinase in Gilthead Seabream (Sparus auratus) that Is Inhibited by Dithiothreitol.
- P. H. M. Klaren, R. Haasdijk, J. R. Metz, L. M. C. Nitsch, V. M. Darras, S. Van der Geyten, and G. Flik (2005)
Endocrinology
146, 5621-5630
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- Vitamin E and organoselenium prevent the cocarcinogenic activity of arsenite with solar UVR in mouse skin.
- A. N. Uddin, F. J. Burns, and T. G. Rossman (2005)
Carcinogenesis
26, 2179-2186
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- Allelic Loss of the Gene for the GPX1 Selenium-Containing Protein Is a Common Event in Cancer.
- Y. Hu, R. V. Benya, R. E. Carroll, and A. M. Diamond (2005)
J. Nutr.
135, 3021S-3024S
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- A Novel Cysteine-rich Domain of Sep15 Mediates the Interaction with UDP-glucose:Glycoprotein Glucosyltransferase.
- V. M. Labunskyy, A. D. Ferguson, D. E. Fomenko, Y. Chelliah, D. L. Hatfield, and V. N. Gladyshev (2005)
J. Biol. Chem.
280, 37839-37845
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- From the Cover: Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family.
- S. Castellano, A. V. Lobanov, C. Chapple, S. V. Novoselov, M. Albrecht, D. Hua, A. Lescure, T. Lengauer, A. Krol, V. N. Gladyshev, et al. (2005)
PNAS
102, 16188-16193
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- Selenium and Mortality in the Elderly: Results from the EVA Study.
- N. T. Akbaraly, J. Arnaud, I. Hininger-Favier, V. Gourlet, A.-M. Roussel, and C. Berr (2005)
Clin. Chem.
51, 2117-2123
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- Multiprotein complexes that link dislocation, ubiquitination, and extraction of misfolded proteins from the endoplasmic reticulum membrane.
- B. N. Lilley and H. L. Ploegh (2005)
PNAS
102, 14296-14301
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- Brainstem Axonal Degeneration in Mice with Deletion of Selenoprotein P.
- W. M. Valentine, K. E. Hill, L. M. Austin, H. L. Valentine, D. Goldowitz, and R. F. Burk (2005)
Toxicol Pathol
33, 570-576
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- Selenoprotein P Is Required for Mouse Sperm Development.
- G. E. Olson, V. P. Winfrey, S. K. NagDas, K. E. Hill, and R. F. Burk (2005)
Biol Reprod
73, 201-211
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