Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Rates of Evolution in Ancient DNA from Adélie Penguins
D. M. Lambert,1*P. A. Ritchie,1C. D. Millar,3B. Holland,2A. J. Drummond,3C. Baroni4
Well-preserved subfossil bones of Adélie penguins,
Pygoscelis adeliae, underlie existing and abandoned nesting
colonies inAntarctica. These bones, dating back to more than 7000 years beforethe present, harbor some of the best-preserved ancient DNA
yetdiscovered. From 96 radiocarbon-aged bones, we report large numbersof mitochondrial haplotypes, some of which appear to be extinct,given
the 380 living birds sampled. We demonstrate DNA sequenceevolution
through time and estimate the rate of evolution of thehypervariable
region I using a Markov chain Monte Carlo integrationand a
least-squares regression analysis. Our calculated ratesof evolution
are approximately two to seven times higher thanprevious indirect
phylogenetic estimates.
1 Institute of Molecular BioSciences,
2 Institute of Fundamental Sciences, Massey
University, Private Bag 11-222, Palmerston North, New Zealand.
3 School of Biological Sciences, University of
Auckland, Private Bag 92019, Auckland, New Zealand.
4 Dipartmento Scienze della Terra, Università
di Pisa, and Consiglio Nazionale Ricerche, Centro Studio Geologia
Strutturale, Via Santa Maria, 53, 56126, Pisa, Italy.
*
To whom correspondence should be addressed. E-mail:
D.M.Lambert{at}massey.ac.nz
These authors contributed equally to this work.
Allan Wilson Centre for Molecular Ecology and
Evolution, New Zealand.
The editors suggest the following Related Resources on Science sites:
In Science Magazine
NEWS OF THE WEEK
Elizabeth Pennisi (22 March 2002) Science295 (5563), 2197.
[DOI: 10.1126/science.295.5563.2197] |Summary »|Full Text »|PDF »
REPORTS
I. Barnes, P. Matheus, B. Shapiro, D. Jensen, and A. Cooper (22 March 2002) Science295 (5563), 2267.
[DOI: 10.1126/science.1067814] |Abstract »|Full Text »|PDF »|Supplemental Data »
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales.
Elevated substitution rates estimated from ancient DNA sequences.
S. Y.W Ho, S.-O. Kolokotronis, and R. G Allaby (2007)
Biol Lett
3, 702-705
|Abstract »|Full Text »|PDF »
Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco.
B. Mila, J. E McCormack, G. Castaneda, R. K Wayne, and T. B Smith (2007)
Proc R Soc B
274, 2653-2660
|Abstract »|Full Text »|PDF »
Evidence for Time Dependency of Molecular Rate Estimates.
S. Y. W. Ho, B. Shapiro, M. J. Phillips, A. Cooper, and A. J. Drummond (2007)
Syst Biol
56, 515-522
|Full Text »|PDF »
Geological Dates and Molecular Rates: Rapid Divergence of Rivers and Their Biotas.
J. M. Waters, D. L. Rowe, S. Apte, T. M. King, G. P. Wallis, L. Anderson, R. J. Norris, D. Craw, and C. P. Burridge (2007)
Syst Biol
56, 271-282
|Abstract »|Full Text »|PDF »
Alarm Bells for the Molecular Clock? No Support for Ho et al.'s Model of Time-Dependent Molecular Rate Estimates.
Estimating a Nucleotide Substitution Rate for Maize from Polymorphism at a Major Domestication Locus.
R. M. Clark, S. Tavare, and J. Doebley (2005)
Mol. Biol. Evol.
22, 2304-2312
|Abstract »|Full Text »|PDF »
Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times.
S. Y. W. Ho, M. J. Phillips, A. Cooper, and A. J. Drummond (2005)
Mol. Biol. Evol.
22, 1561-1568
|Abstract »|Full Text »|PDF »
Understanding Differences Between Phylogenetic and Pedigree-Derived mtDNA Mutation Rate: A Model Using Families from the Azores Islands (Portugal).
C. Santos, R. Montiel, B. Sierra, C. Bettencourt, E. Fernandez, L. Alvarez, M. Lima, A. Abade, and M. P. Aluja (2005)
Mol. Biol. Evol.
22, 1490-1505
|Abstract »|Full Text »|PDF »
Is a Large-Scale DNA-Based Inventory of Ancient Life Possible?.
D. M. Lambert, A. Baker, L. Huynen, O. Haddrath, P. D. N. Hebert, and C. D. Millar (2005)
J. Hered.
96, 279-284
|Abstract »|Full Text »|PDF »
Serial SimCoal: A population genetics model for data from multiple populations and points in time.
C. N. K. Anderson, U. Ramakrishnan, Y. L. Chan, and E. A. Hadly (2005)
Bioinformatics
21, 1733-1734
|Abstract »|Full Text »|PDF »
Beringian Paleoecology Inferred from Permafrost-Preserved Fungal DNA.
M. C. Lydolph, J. Jacobsen, P. Arctander, M. T. P. Gilbert, D. A. Gilichinsky, A. J. Hansen, E. Willerslev, and L. Lange (2005)
Appl. Envir. Microbiol.
71, 1012-1017
|Abstract »|Full Text »|PDF »
Rise and Fall of the Beringian Steppe Bison.
B. Shapiro, A. J. Drummond, A. Rambaut, M. C. Wilson, P. E. Matheus, A. V. Sher, O. G. Pybus, M. T. P. Gilbert, I. Barnes, J. Binladen, et al. (2004)
Science
306, 1561-1565
|Abstract »|Full Text »|PDF »
Ancient DNA Enables Timing of the Pleistocene Origin and Holocene Expansion of Two Adelie Penguin Lineages in Antarctica.
P. A. Ritchie, C. D. Millar, G. C. Gibb, C. Baroni, and D. M. Lambert (2004)
Mol. Biol. Evol.
21, 240-248
|Abstract »|Full Text »|PDF »
Inferring Evolutionary Rates Using Serially Sampled Sequences from Several Populations.
A. G. Rodrigo, M. Goode, R. Forsberg, H. A. Ross, and A. Drummond (2003)
Mol. Biol. Evol.
20, 2010-2018
|Abstract »|Full Text »|PDF »
Epidemiology, Genetic Diversity, and Evolution of Endemic Feline Immunodeficiency Virus in a Population of Wild Cougars.
R. Biek, A. G. Rodrigo, D. Holley, A. Drummond, C. R. Anderson Jr., H. A. Ross, and M. Poss (2003)
J. Virol.
77, 9578-9589
|Abstract »|Full Text »|PDF »
Accelerated Protein Evolution and Origins of Human-Specific Features: FOXP2 as an Example.