Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 8 March 2002:
Vol. 295. no. 5561, pp. 1863 - 1868
DOI: 10.1126/science.1068186

Research Articles

Molecular Basis of Proton Motive Force Generation: Structure of Formate Dehydrogenase-N

Mika Jormakka,1 Susanna Törnroth,3 Bernadette Byrne,2 So Iwata123*

The structure of the membrane protein formate dehydrogenase-N (Fdn-N), a major component of Escherichia coli nitrate respiration, has been determined at 1.6 angstroms. The structure demonstrates 11 redox centers, including molybdopterin-guanine dinucleotides, five [4Fe-4S] clusters, two heme b groups, and a menaquinone analog. These redox centers are aligned in a single chain, which extends almost 90 angstroms through the enzyme. The menaquinone reduction site associated with a possible proton pathway was also characterized. This structure provides critical insights into the proton motive force generation by redox loop, a common mechanism among a wide range of respiratory enzymes.

1 Division of Biomedical Sciences and
2 Department of Biological Sciences, Imperial College, London SW7 2AZ, UK.
3 Department of Biochemistry, BMC, Uppsala University, Box 576, S-75123 Uppsala, Sweden.
*   To whom correspondence should be addressed. E-mail: s.iwata{at}ic.ac.uk


Read the Full Text



THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
A Molybdopterin Oxidoreductase Is Involved in H2 Oxidation in Desulfovibrio desulfuricans G20.
X. Li, Q. Luo, N. Q. Wofford, K. L. Keller, M. J. McInerney, J. D. Wall, and L. R. Krumholz (2009)
J. Bacteriol. 191, 2675-2682
   Abstract »    Full Text »    PDF »
Formate-Dependent Autotrophic Growth in Sinorhizobium meliloti.
B. S. Pickering and I. J. Oresnik (2008)
J. Bacteriol. 190, 6409-6418
   Abstract »    Full Text »    PDF »
Reversible interconversion of carbon dioxide and formate by an electroactive enzyme.
T. Reda, C. M. Plugge, N. J. Abram, and J. Hirst (2008)
PNAS 105, 10654-10658
   Abstract »    Full Text »    PDF »
Thematic Review Series: Glycerolipids. Cardiolipin synthesis for the assembly of bacterial and mitochondrial membranes.
M. Schlame (2008)
J. Lipid Res. 49, 1607-1620
   Abstract »    Full Text »    PDF »
Evolutionary Persistence of the Molybdopyranopterin-Containing Sulfite Oxidase Protein Fold.
G. J. Workun, K. Moquin, R. A. Rothery, and J. H. Weiner (2008)
Microbiol. Mol. Biol. Rev. 72, 228-248
   Abstract »    Full Text »    PDF »
Histidine Cycle Mechanism for the Concerted Proton/Electron Transfer from Ascorbate to the Cytosolic Haem b Centre of Cytochrome b561: A Unique Machinery for the Biological Transmembrane Electron Transfer.
N. Nakanishi, F. Takeuchi, and M. Tsubaki (2007)
J. Biochem. 142, 553-560
   Abstract »    Full Text »    PDF »
Spectropotentiometric and Structural Analysis of the Periplasmic Nitrate Reductase from Escherichia coli.
B. J. N. Jepson, S. Mohan, T. A. Clarke, A. J. Gates, J. A. Cole, C. S. Butler, J. N. Butt, A. M. Hemmings, and D. J. Richardson (2007)
J. Biol. Chem. 282, 6425-6437
   Abstract »    Full Text »    PDF »
Constructing the wonders of the bacterial world: biosynthesis of complex enzymes.
F. Sargent (2007)
Microbiology 153, 633-651
   Abstract »    Full Text »    PDF »
Soluble Aldose Sugar Dehydrogenase from Escherichia coli: A HIGHLY EXPOSED ACTIVE SITE CONFERRING BROAD SUBSTRATE SPECIFICITY.
S. M. Southall, J. J. Doel, D. J. Richardson, and A. Oubrie (2006)
J. Biol. Chem. 281, 30650-30659
   Abstract »    Full Text »    PDF »
Resolution of Distinct Membrane-Bound Enzymes from Enterobacter cloacae SLD1a-1 That Are Responsible for Selective Reduction of Nitrate and Selenate Oxyanions.
H. Ridley, C. A. Watts, D. J. Richardson, and C. S. Butler (2006)
Appl. Envir. Microbiol. 72, 5173-5180
   Abstract »    Full Text »    PDF »
Succinate dehydrogenase functioning by a reverse redox loop mechanism and fumarate reductase in sulphate-reducing bacteria..
T. Zaunmuller, D. J. Kelly, F. O. Glockner, and G. Unden (2006)
Microbiology 152, 2443-2453
   Abstract »    Full Text »    PDF »
Reduction of Soluble and Insoluble Iron Forms by Membrane Fractions of Shewanella oneidensis Grown under Aerobic and Anaerobic Conditions.
S. S. Ruebush, S. L. Brantley, and M. Tien (2006)
Appl. Envir. Microbiol. 72, 2925-2935
   Abstract »    Full Text »    PDF »
Structural and Computational Analysis of the Quinone-binding Site of Complex II (Succinate-Ubiquinone Oxidoreductase): A MECHANISM OF ELECTRON TRANSFER AND PROTON CONDUCTION DURING UBIQUINONE REDUCTION.
R. Horsefield, V. Yankovskaya, G. Sexton, W. Whittingham, K. Shiomi, S. Omura, B. Byrne, G. Cecchini, and S. Iwata (2006)
J. Biol. Chem. 281, 7309-7316
   Abstract »    Full Text »    PDF »
Experimental support for the "E pathway hypothesis" of coupled transmembrane e- and H+ transfer in dihemic quinol:fumarate reductase.
C. R. D. Lancaster, U. S. Sauer, R. Gross, A. H. Haas, J. Graf, H. Schwalbe, W. Mantele, J. Simon, and M. G. Madej (2005)
PNAS 102, 18860-18865
   Abstract »    Full Text »    PDF »
Structural and Biochemical Characterization of a Quinol Binding Site of Escherichia coli Nitrate Reductase A.
M. G. Bertero, R. A. Rothery, N. Boroumand, M. Palak, F. Blasco, N. Ginet, J. H. Weiner, and N. C. J. Strynadka (2005)
J. Biol. Chem. 280, 14836-14843
   Abstract »    Full Text »    PDF »
A Little Help from My Friends: Quality Control of Presecretory Proteins in Bacteria.
A. C. Fisher and M. P. DeLisa (2004)
J. Bacteriol. 186, 7467-7473
   Full Text »    PDF »
Involvement of the Molybdenum Cofactor Biosynthetic Machinery in the Maturation of the Escherichia coli Nitrate Reductase A.
A. Vergnes, K. Gouffi-Belhabich, F. Blasco, G. Giordano, and A. Magalon (2004)
J. Biol. Chem. 279, 41398-41403
   Abstract »    Full Text »    PDF »
mRNA Secondary Structure Modulates Translation of Tat-Dependent Formate Dehydrogenase N.
C. Punginelli, B. Ize, N. R. Stanley, V. Stewart, G. Sawers, B. C. Berks, and T. Palmer (2004)
J. Bacteriol. 186, 6311-6315
   Abstract »    Full Text »    PDF »
Kinetic and Mechanistic Characterization of the Formyl-CoA Transferase from Oxalobacter formigenes.
S. Jonsson, S. Ricagno, Y. Lindqvist, and N. G. J. Richards (2004)
J. Biol. Chem. 279, 36003-36012
   Abstract »    Full Text »    PDF »
Crystal structure of pyrogallol-phloroglucinol transhydroxylase, an Mo enzyme capable of intermolecular hydroxyl transfer between phenols.
A. Messerschmidt, H. Niessen, D. Abt, O. Einsle, B. Schink, and P. M. H. Kroneck (2004)
PNAS 101, 11571-11576
   Abstract »    Full Text »    PDF »
Computational analysis of {alpha}-helical membrane protein structure: implications for the prediction of 3D structural models.
T. A. Eyre, L. Partridge, and J. M. Thornton (2004)
Protein Eng. Des. Sel. 17, 613-624
   Abstract »    Full Text »    PDF »
Selenocysteine-Containing Proteins in Anaerobic Benzoate Metabolism of Desulfococcus multivorans.
F. Peters, M. Rother, and M. Boll (2004)
J. Bacteriol. 186, 2156-2163
   Abstract »    Full Text »    PDF »
Characterization of the Menaquinone Reduction Site in the Diheme Cytochrome b Membrane Anchor of Wolinella succinogenes NiFe-hydrogenase.
R. Gross, R. Pisa, M. Sanger, C. R. D. Lancaster, and J. Simon (2004)
J. Biol. Chem. 279, 274-281
   Abstract »    Full Text »    PDF »
SCOP database in 2004: refinements integrate structure and sequence family data.
A. Andreeva, D. Howorth, S. E. Brenner, T. J. P. Hubbard, C. Chothia, and A. G. Murzin (2004)
Nucleic Acids Res. 32, D226-229
   Abstract »    Full Text »    PDF »
Membrane-bound hydrogenase and sulfur reductase of the hyperthermophilic and acidophilic archaeon Acidianus ambivalens.
S. Laska, F. Lottspeich, and A. Kletzin (2003)
Microbiology 149, 2357-2371
   Abstract »    Full Text »    PDF »
Arsenite Oxidase, an Ancient Bioenergetic Enzyme.
E. Lebrun, M. Brugna, F. Baymann, D. Muller, D. Lievremont, M.-C. Lett, and W. Nitschke (2003)
Mol. Biol. Evol. 20, 686-693
   Abstract »    Full Text »    PDF »
Architecture of Succinate Dehydrogenase and Reactive Oxygen Species Generation.
V. Yankovskaya, R. Horsefield, S. Tornroth, C. Luna-Chavez, H. Miyoshi, C. Leger, B. Byrne, G. Cecchini, and S. Iwata (2003)
Science 299, 700-704
   Abstract »    Full Text »    PDF »
Novel [2Fe-2S]-type Redox Center C in SdhC of Archaeal Respiratory Complex II from Sulfolobus tokodaii Strain 7.
T. Iwasaki, A. Kounosu, M. Aoshima, D. Ohmori, T. Imai, A. Urushiyama, N. J. Cosper, and R. A. Scott (2002)
J. Biol. Chem. 277, 39642-39648
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)