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Originally published in Science Express on 26 July 2001
Science 14 September 2001:
Vol. 293. no. 5537, pp. 2101 - 2105
DOI: 10.1126/science.1062191
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Reports

Global Analysis of Protein Activities Using Proteome Chips

Heng Zhu,1 Metin Bilgin,1 Rhonda Bangham,1 David Hall,2 Antonio Casamayor,1 Paul Bertone,1 Ning Lan,2 Ronald Jansen,2 Scott Bidlingmaier,2 Thomas Houfek,3 Tom Mitchell,3 Perry Miller,4 Ralph A. Dean,3 Mark Gerstein,2 Michael Snyder12*

To facilitate studies of the yeast proteome, we cloned 5800 open reading frames and overexpressed and purified their corresponding proteins. The proteins were printed onto slides at high spatial density to form a yeast proteome microarray and screened for their ability to interact with proteins and phospholipids. We identified many new calmodulin- and phospholipid-interacting proteins; a common potential binding motif was identified for many of the calmodulin-binding proteins. Thus, microarrays of an entire eukaryotic proteome can be prepared and screened for diverse biochemical activities. The microarrays can also be used to screen protein-drug interactions and to detect posttranslational modifications.

1 Department of Molecular, Cellular, and Developmental Biology and
2 Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.
3 Fungal Genomics Laboratory, North Carolina State University, Campus Box 7251, Raleigh, NC 27695-7251, USA.
4 Department of Anesthesiology, Yale University, New Haven, CT 06520, USA.
*   To whom correspondence should be addressed. E-mail: michael.snyder{at}yale.edu

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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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   Abstract »    Full Text »    PDF »
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Z. Shi and G. C. Ferreira (2004)
J. Biol. Chem. 279, 19977-19986
   Abstract »    Full Text »    PDF »
Functional genomics and proteomics: application in neurosciences.
K E Wilson, M M Ryan, J E Prime, D P Pashby, P R Orange, G O'Beirne, J G Whateley, S Bahn, and C M Morris (2004)
J. Neurol. Neurosurg. Psychiatry 75, 529-538
   Abstract »    Full Text »    PDF »
Analysis of expression and posttranslational modification of proteins during hypoxia.
G. K. Kumar and J. B. Klein (2004)
J Appl Physiol 96, 1178-1186
   Abstract »    Full Text »    PDF »
Applicability of Tandem Affinity Purification MudPIT to Pathway Proteomics in Yeast.
J. Graumann, L. A. Dunipace, J. H. Seol, W. H. McDonald, J. R. Yates III, B. J. Wold, and R. J. Deshaies (2004)
Mol. Cell. Proteomics 3, 226-237
   Abstract »    Full Text »    PDF »
Evaluation of MafG interaction with Maf recognition element arrays by surface plasmon resonance imaging technique.
M. Kyo, T. Yamamoto, H. Motohashi, T. Kamiya, T. Kuroita, T. Tanaka, J. D. Engel, B. Kawakami, and M. Yamamoto (2004)
Genes Cells 9, 153-164
   Abstract »    Full Text »    PDF »
The Database of Interacting Proteins: 2004 update.
L. Salwinski, C. S. Miller, A. J. Smith, F. K. Pettit, J. U. Bowie, and D. Eisenberg (2004)
Nucleic Acids Res. 32, D449-451
   Abstract »    Full Text »    PDF »
ORFDB: an information resource linking scientific content to a high-quality Open Reading Frame (ORF) collection.
F. Liang, U. Matrubutham, B. Parvizi, J. Yen, D. Duan, J. Mirchandani, S. Hashima, U. Nguyen, E. Ubil, J. Loewenheim, et al. (2004)
Nucleic Acids Res. 32, D595-599
   Abstract »    Full Text »    PDF »
High throughput gene expression profiling: a molecular approach to integrative physiology.
M. Liang, A. W. Cowley Jr, and A. S. Greene (2004)
J. Physiol. 554, 22-30
   Abstract »    Full Text »    PDF »
Finding Partners: Emerging Protein Interaction Technologies Applied to Signaling Networks.
I. Stagljar (2003)
Sci. STKE 2003, pe56
   Abstract »    Full Text »    PDF »
Predicting protein functions from redundancies in large-scale protein interaction networks.
M. P. Samanta and S. Liang (2003)
PNAS 100, 12579-12583
   Abstract »    Full Text »    PDF »


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