Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 5 January 2001:
Vol. 291. no. 5501, pp. 121 - 125
DOI: 10.1126/science.291.5501.121

Reports

Active Disruption of an RNA-Protein Interaction by a DExH/D RNA Helicase

Eckhard Jankowsky,1 Christian H. Gross,2 Stewart Shuman,2 Anna Marie Pyle13*

All aspects of cellular RNA metabolism and the replication of many viruses require DExH/D proteins that manipulate RNA in a manner that requires nucleoside triphosphates. Although DExH/D proteins have been shown to unwind purified RNA duplexes, most RNA molecules in the cellular environment are complexed with proteins. It has therefore been speculated that DExH/D proteins may also affect RNA-protein interactions. We demonstrate that the DExH protein NPH-II from vaccinia virus can displace the protein U1A from RNA in an active adenosine triphosphate-dependent fashion. NPH-II increases the rate of U1A dissociation by more than three orders of magnitude while retaining helicase processivity. This indicates that DExH/D proteins can effectively catalyze protein displacement from RNA and thereby participate in the structural reorganization of ribonucleoprotein assemblies.

1 Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
2 Sloan Kettering Institute, New York, NY 10021, USA.
3 Howard Hughes Medical Institute, Boston, MA 02115, USA.
*   To whom correspondence should be addressed. E-mail: amp11{at}columbia.edu


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Structure of the C-terminus of the mRNA export factor Dbp5 reveals the interaction surface for the ATPase activator Gle1.
Z. Y. Dossani, C. S. Weirich, J. P. Erzberger, J. M. Berger, and K. Weis (2009)
PNAS 106, 16251-16256
   Abstract »    Full Text »    PDF »
A Targeted Bypass Screen Identifies Ynl187p, Prp42p, Snu71p, and Cbp80p for Stable U1 snRNP/Pre-mRNA Interaction.
R. Hage, L. Tung, H. Du, L. Stands, M. Rosbash, and T.-H. Chang (2009)
Mol. Cell. Biol. 29, 3941-3952
   Abstract »    Full Text »    PDF »
DExD/H-box Prp5 protein is in the spliceosome during most of the splicing cycle.
T. R. Kosowski, H. R. Keys, T. K. Quan, and S. W. Ruby (2009)
RNA 15, 1345-1362
   Abstract »    Full Text »    PDF »
The DEXD/H-box RNA Helicase DDX19 Is Regulated by an {alpha}-Helical Switch.
R. Collins, T. Karlberg, L. Lehtio, P. Schutz, S. van den Berg, L.-G. Dahlgren, M. Hammarstrom, J. Weigelt, and H. Schuler (2009)
J. Biol. Chem. 284, 10296-10300
   Abstract »    Full Text »    PDF »
The NS4A Protein of Hepatitis C Virus Promotes RNA-Coupled ATP Hydrolysis by the NS3 Helicase.
R. K. F. Beran, B. D. Lindenbach, and A. M. Pyle (2009)
J. Virol. 83, 3268-3275
   Abstract »    Full Text »    PDF »
Cytosolic Viral Sensor RIG-I Is a 5'-Triphosphate-Dependent Translocase on Double-Stranded RNA.
S. Myong, S. Cui, P. V. Cornish, A. Kirchhofer, M. U. Gack, J. U. Jung, K.-P. Hopfner, and T. Ha (2009)
Science 323, 1070-1074
   Abstract »    Full Text »    PDF »
Establishing a Mechanistic Basis for the Large Kinetic Steps of the NS3 Helicase.
V. Serebrov, R. K. F. Beran, and A. M. Pyle (2009)
J. Biol. Chem. 284, 2512-2521
   Abstract »    Full Text »    PDF »
Mechanism of ATP turnover inhibition in the EJC.
K. H. Nielsen, H. Chamieh, C. B.F. Andersen, F. Fredslund, K. Hamborg, H. Le Hir, and G. R. Andersen (2009)
RNA 15, 67-75
   Abstract »    Full Text »    PDF »
Recruitment of the RNA Helicase RHAU to Stress Granules via a Unique RNA-binding Domain.
K. Chalupnikova, S. Lattmann, N. Selak, F. Iwamoto, Y. Fujiki, and Y. Nagamine (2008)
J. Biol. Chem. 283, 35186-35198
   Abstract »    Full Text »    PDF »
Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants.
R. Gabrenaite-Verkhovskaya, I. A. Andreev, N. O. Kalinina, L. Torrance, M. E. Taliansky, and K. Makinen (2008)
J. Gen. Virol. 89, 829-838
   Abstract »    Full Text »    PDF »
Novel pro- and anti-recombination activities of the Bloom's syndrome helicase.
D. V. Bugreev, X. Yu, E. H. Egelman, and A. V. Mazin (2007)
Genes & Dev. 21, 3085-3094
   Abstract »    Full Text »    PDF »
Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone.
P. Tijerina, H. Bhaskaran, and R. Russell (2006)
PNAS 103, 16698-16703
   Abstract »    Full Text »    PDF »
Structure of the Exon Junction Core Complex with a Trapped DEAD-Box ATPase Bound to RNA.
C. B. F. Andersen, L. Ballut, J. S. Johansen, H. Chamieh, K. H. Nielsen, C. L. P. Oliveira, J. S. Pedersen, B. Seraphin, H. L. Hir, and G. R. Andersen (2006)
Science 313, 1968-1972
   Abstract »    Full Text »    PDF »
Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases.
E. Jankowsky and H. Bowers (2006)
Nucleic Acids Res. 34, 4181-4188
   Abstract »    Full Text »    PDF »
DExD/H box RNA helicases: multifunctional proteins with important roles in transcriptional regulation.
F. V. Fuller-Pace (2006)
Nucleic Acids Res. 34, 4206-4215
   Abstract »    Full Text »    PDF »
DNA unwinding and protein displacement by superfamily 1 and superfamily 2 helicases.
S. G. Mackintosh and K. D. Raney (2006)
Nucleic Acids Res. 34, 4154-4159
   Abstract »    Full Text »    PDF »
The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP.
S. Liu, R. Rauhut, H.-P. Vornlocher, and R. Luhrmann (2006)
RNA 12, 1418-1430
   Abstract »    Full Text »    PDF »
Intron removal requires proofreading of U2AF/3' splice site recognition by DEK..
L. M. M. Soares, K. Zanier, C. Mackereth, M. Sattler, and J. Valcarcel (2006)
Science 312, 1961-1965
   Abstract »    Full Text »    PDF »
RNA helicases and abiotic stress.
G. W. Owttrim (2006)
Nucleic Acids Res. 34, 3220-3230
   Abstract »    Full Text »    PDF »
Xp54 and related (DDX6-like) RNA helicases: roles in messenger RNP assembly, translation regulation and RNA degradation.
A. Weston and J. Sommerville (2006)
Nucleic Acids Res. 34, 3082-3094
   Abstract »    Full Text »    PDF »
The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis.
S. Granneman, C. Lin, E. A. Champion, M. R. Nandineni, C. Zorca, and S. J. Baserga (2006)
Nucleic Acids Res. 34, 3189-3199
   Abstract »    Full Text »    PDF »
Displacement of a DNA binding protein by Dda helicase.
A. K. Byrd and K. D. Raney (2006)
Nucleic Acids Res. 34, 3020-3029
   Abstract »    Full Text »    PDF »
A Novel Ded1-like RNA Helicase Interacts with the Y-box Protein ctYB-1 in Nuclear mRNP Particles and in Polysomes.
D. Nashchekin, J. Zhao, N. Visa, and B. Daneholt (2006)
J. Biol. Chem. 281, 14263-14272
   Abstract »    Full Text »    PDF »
Discriminatory RNP remodeling by the DEAD-box protein DED1.
H. A. Bowers, P. A. Maroney, M. E. Fairman, B. Kastner, R. Luhrmann, T. W. Nilsen, and E. Jankowsky (2006)
RNA 12, 903-912
   Abstract »    Full Text »    PDF »
The Drosophila P68 RNA helicase regulates transcriptional deactivation by promoting RNA release from chromatin.
M. Buszczak and A. C. Spradling (2006)
Genes & Dev. 20, 977-989
   Abstract »    Full Text »    PDF »
Mutational analysis of human eIF4AIII identifies regions necessary for exon junction complex formation and nonsense-mediated mRNA decay..
T. SHIBUYA, T. O. TANGE, M. E. STROUPE, and M. J. MOORE (2006)
RNA 12, 360-374
   Abstract »    Full Text »    PDF »
Comprehensive Mutational Analysis of Yeast DEXD/H Box RNA Helicases Required for Small Ribosomal Subunit Synthesis.
S. Granneman, K. A. Bernstein, F. Bleichert, and S. J. Baserga (2006)
Mol. Cell. Biol. 26, 1183-1194
   Abstract »    Full Text »    PDF »
Comprehensive Mutational Analysis of Yeast DEXD/H Box RNA Helicases Involved in Large Ribosomal Subunit Biogenesis.
K. A. Bernstein, S. Granneman, A. V. Lee, S. Manickam, and S. J. Baserga (2006)
Mol. Cell. Biol. 26, 1195-1208
   Abstract »    Full Text »    PDF »
Prp43p Is a DEAH-Box Spliceosome Disassembly Factor Essential for Ribosome Biogenesis.
D. J. Combs, R. J. Nagel, M. Ares Jr., and S. W. Stevens (2006)
Mol. Cell. Biol. 26, 523-534
   Abstract »    Full Text »    PDF »
Ddx42p--a human DEAD box protein with RNA chaperone activities.
H. Uhlmann-Schiffler, C. Jalal, and H. Stahl (2006)
Nucleic Acids Res. 34, 10-22
   Abstract »    Full Text »    PDF »
Structure of Dicer and Mechanistic Implications for RNAi.
I.J. MacRAE, F. LI, K. ZHOU, W.Z. CANDE, and J.A. DOUDNA (2006)
Cold Spring Harb Symp Quant Biol 71, 73-80
   Abstract »    PDF »
Crystal structure and functional analysis of DEAD-box protein Dhh1p.
Z. CHENG, J. COLLER, R. PARKER, and H. SONG (2005)
RNA 11, 1258-1270
   Abstract »    Full Text »    PDF »
Evidence in vivo that the DEAD-box RNA helicase RhlB facilitates the degradation of ribosome-free mRNA by RNase E.
V. Khemici, L. Poljak, I. Toesca, and A. J. Carpousis (2005)
PNAS 102, 6913-6918
   Abstract »    Full Text »    PDF »
Physical and Genetic Interactions Link the Yeast Protein Zds1p with mRNA Nuclear Export.
F. Estruch, C. A. Hodge, S. Rodriguez-Navarro, and C. N. Cole (2005)
J. Biol. Chem. 280, 9691-9697
   Abstract »    Full Text »    PDF »
Choosing between DNA and RNA: the polymer specificity of RNA helicase NPH-II.
J. Kawaoka and A. M. Pyle (2005)
Nucleic Acids Res. 33, 644-649
   Abstract »    Full Text »    PDF »
p68 DEAD Box RNA Helicase Expression in Keratinocytes: REGULATION, NUCLEOLAR LOCALIZATION, AND FUNCTIONAL CONNECTION TO PROLIFERATION AND VASCULAR ENDOTHELIAL GROWTH FACTOR GENE EXPRESSION.
K. Kahlina, I. Goren, J. Pfeilschifter, and S. Frank (2004)
J. Biol. Chem. 279, 44872-44882
   Abstract »    Full Text »    PDF »
Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme.
F. V. Karginov and O. C. Uhlenbeck (2004)
Nucleic Acids Res. 32, 3028-3032
   Abstract »    Full Text »    PDF »
The hepatitis C virus Core protein is a potent nucleic acid chaperone that directs dimerization of the viral (+) strand RNA in vitro.
G. Cristofari, R. Ivanyi-Nagy, C. Gabus, S. Boulant, J.-P. Lavergne, F. Penin, and J.-L. Darlix (2004)
Nucleic Acids Res. 32, 2623-2631
   Abstract »    Full Text »    PDF »
The DNA-unwinding mechanism of the ring helicase of bacteriophage T7.
Y.-J. Jeong, M. K. Levin, and S. S. Patel (2004)
PNAS 101, 7264-7269
   Abstract »    Full Text »    PDF »
Protein Displacement by DExH/D "RNA Helicases" Without Duplex Unwinding.
M. E. Fairman, P. A. Maroney, W. Wang, H. A. Bowers, P. Gollnick, T. W. Nilsen, and E. Jankowsky (2004)
Science 304, 730-734
   Abstract »    Full Text »    PDF »
Ded1p, a conserved DExD/H-box translation factor, can promote yeast L-A virus negative-strand RNA synthesis in vitro.
J.-L. Chong, R.-Y. Chuang, L. Tung, and T.-H. Chang (2004)
Nucleic Acids Res. 32, 2031-2038
   Abstract »    Full Text »    PDF »
Crystal structure of the BstDEAD N-terminal domain: A novel DEAD protein from Bacillus stearothermophilus.
A. B. CARMEL and B. W. MATTHEWS (2004)
RNA 10, 66-74
   Abstract »    Full Text »    PDF »
Silencing of RNA Helicase II/Gu{alpha} Inhibits Mammalian Ribosomal RNA Production.
D. Henning, R. B. So, R. Jin, L. F. Lau, and B. C. Valdez (2003)
J. Biol. Chem. 278, 52307-52314
   Abstract »    Full Text »    PDF »
ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA.
R. Perriman, I. Barta, G. K. Voeltz, J. Abelson, and M. Ares Jr. (2003)
PNAS 100, 13857-13862
   Abstract »    Full Text »    PDF »
Down-regulation of RNA Helicase II/Gu Results in the Depletion of 18 and 28 S rRNAs in Xenopus Oocyte.
H. Yang, J. Zhou, R. L. Ochs, D. Henning, R. Jin, and B. C. Valdez (2003)
J. Biol. Chem. 278, 38847-38859
   Abstract »    Full Text »    PDF »
Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes.
S. S.-I Tseng-Rogenski, J.-L. Chong, C. B. Thomas, S. Enomoto, J. Berman, and T.-H. Chang (2003)
Nucleic Acids Res. 31, 4995-5002
   Abstract »    Full Text »    PDF »
Triple gene block: modular design of a multifunctional machine for plant virus movement.
S. Yu. Morozov and A. G. Solovyev (2003)
J. Gen. Virol. 84, 1351-1366
   Abstract »    Full Text »    PDF »
Transport Signals and Transcription-dependent Nuclear Localization of the Putative DEAD-box Helicase MDDX28.
R. Valgardsdottir and H. Prydz (2003)
J. Biol. Chem. 278, 21146-21154
   Abstract »    Full Text »    PDF »
An Early Function during Transcription for the Yeast mRNA Export Factor Dbp5p/Rat8p Suggested by Its Genetic and Physical Interactions with Transcription Factor IIH Components.
F. Estruch and C. N. Cole (2003)
Mol. Biol. Cell 14, 1664-1676
   Abstract »    Full Text »    PDF »
Coordination of editing and splicing of glutamate receptor pre-mRNA.
E. BRATT and M. OHMAN (2003)
RNA 9, 309-318
   Abstract »    Full Text »    PDF »
A Novel Domain within the DEAD-Box Protein DP103 Is Essential for Transcriptional Repression and Helicase Activity.
X. Yan, J.-F. Mouillet, Q. Ou, and Y. Sadovsky (2003)
Mol. Cell. Biol. 23, 414-423
   Abstract »    Full Text »
Identification of a Human Decapping Complex Associated with hUpf Proteins in Nonsense-Mediated Decay.
J. Lykke-Andersen (2002)
Mol. Cell. Biol. 22, 8114-8121
   Abstract »    Full Text »    PDF »
Regulation of Alternative Splicing by the ATP-Dependent DEAD-Box RNA Helicase p72.
A. Honig, D. Auboeuf, M. M. Parker, B. W. O'Malley, and S. M. Berget (2002)
Mol. Cell. Biol. 22, 5698-5707
   Abstract »    Full Text »    PDF »
p68 RNA Helicase Is an Essential Human Splicing Factor That Acts at the U1 snRNA-5' Splice Site Duplex.
Z.-R. Liu (2002)
Mol. Cell. Biol. 22, 5443-5450
   Abstract »    Full Text »    PDF »
Preformed hexamers of SV40 T antigen are active in RNA and origin-DNA unwinding.
H. Uhlmann-Schiffler, S. Seinsoth, and H. Stahl (2002)
Nucleic Acids Res. 30, 3192-3201
   Abstract »    Full Text »    PDF »
Prp43 Is an Essential RNA-dependent ATPase Required for Release of Lariat-Intron from the Spliceosome.
A. Martin, S. Schneider, and B. Schwer (2002)
J. Biol. Chem. 277, 17743-17750
   Abstract »    Full Text »    PDF »
The ATPase, RNA Unwinding, and RNA Binding Activities of Recombinant p68 RNA Helicase.
Y. Huang and Z.-R. Liu (2002)
J. Biol. Chem. 277, 12810-12815
   Abstract »    Full Text »    PDF »
ATP-Dependent Remodeling of the Spliceosome: Intragenic Suppressors of Release-Defective Mutants of Saccharomyces cerevisiae Prp22.
E. Campodonico and B. Schwer (2002)
Genetics 160, 407-415
   Abstract »    Full Text »    PDF »
Nuclear DNA Helicase II/RNA Helicase A Binds to Filamentous Actin.
S. Zhang, K. Buder, C. Burkhardt, B. Schlott, M. Gorlach, and F. Grosse (2002)
J. Biol. Chem. 277, 843-853
   Abstract »    Full Text »
Poliovirus 5'-Terminal Cloverleaf RNA Is Required in cis for VPg Uridylylation and the Initiation of Negative-Strand RNA Synthesis.
T. Lyons, K. E. Murray, A. W. Roberts, and D. J. Barton (2001)
J. Virol. 75, 10696-10708
   Abstract »    Full Text »    PDF »
Distinct RNP Complexes of Shuttling hnRNP Proteins with Pre-mRNA and mRNA: Candidate Intermediates in Formation and Export of mRNA.
S. Mili, H. J. Shu, Y. Zhao, and S. Pinol-Roma (2001)
Mol. Cell. Biol. 21, 7307-7319
   Abstract »    Full Text »    PDF »
Messenger RNAs are recruited for nuclear export during transcription.
E. P. Lei, H. Krebber, and P. A. Silver (2001)
Genes & Dev. 15, 1771-1782
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)