Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Molecular Evidence for the Early Evolution of Photosynthesis
Jin Xiong,1William M. Fischer,1Kazuhito Inoue,2Masaaki Nakahara,2Carl E. Bauer1*
The origin and evolution of photosynthesis have
long remained enigmatic due to a lack of sequence information of
photosynthesisgenes across the entire photosynthetic domain. To probe
earlyevolutionary history of photosynthesis, we obtained new sequenceinformation of a number of photosynthesis genes from the greensulfur
bacterium Chlorobium tepidum and the green nonsulfur
bacteriumChloroflexus aurantiacus. A total of 31 open
reading frames thatencode enzymes involved in
bacteriochlorophyll/porphyrin biosynthesis,carotenoid biosynthesis,
and photosynthetic electron transferwere identified in about 100 kilobase pairs of genomic sequence.Phylogenetic analyses of multiple
magnesium-tetrapyrrole biosynthesisgenes using a combination of
distance, maximum parsimony, andmaximum likelihood methods indicate
that heliobacteria are closestto the last common ancestor of all
oxygenic photosynthetic lineagesand that green sulfur bacteria and
green nonsulfur bacteria areeach other's closest relatives. Parsimony
and distance analysesfurther identify purple bacteria as the earliest
emerging photosyntheticlineage. These results challenge previous
conclusions based on16S ribosomal RNA and Hsp60/Hsp70
analyses that green nonsulfurbacteria or heliobacteria are the
earliest phototrophs. The overallconsensus of our phylogenetic
analysis, that bacteriochlorophyllbiosynthesis evolved before
chlorophyll biosynthesis, also arguesagainst the long-held Granick
hypothesis.
1 Department of Biology, Indiana University,
Bloomington, IN 47405, USA.
2 Department of
Biological Sciences, Kanagawa University, Hiratsuka, Kanagawa,
259-1293, Japan.
*
To whom correspondence should be addressed. E-mail:
cbauer{at}bio.indiana.edu
Identification of Two Homologous Genes, chlAI and chlAII, That Are Differentially Involved in Isocyclic Ring Formation of Chlorophyll a in the Cyanobacterium Synechocystis sp. PCC 6803.
K. Minamizaki, T. Mizoguchi, T. Goto, H. Tamiaki, and Y. Fujita (2008)
J. Biol. Chem.
283, 2684-2692
|Abstract »|Full Text »|PDF »
Protein Shape and Crowding Drive Domain Formation and Curvature in Biological Membranes.
R. N. Frese, J. C. Pamies, J. D. Olsen, S. Bahatyrova, C. D. van der Weij-de Wit, T. J. Aartsma, C. Otto, C. N. Hunter, D. Frenkel, and R. van Grondelle (2008)
Biophys. J.
94, 640-647
|Abstract »|Full Text »|PDF »
Realization of a four-step molecular switch in scanning tunneling microscope manipulation of single chlorophyll-a molecules.
Data mining for proteins characteristic of clades.
M. Bern, D. Goldberg, and E. Lyashenko (2006)
Nucleic Acids Res.
34, 4342-4353
|Abstract »|Full Text »|PDF »
The Rieske Protein: A Case Study on the Pitfalls of Multiple Sequence Alignments and Phylogenetic Reconstruction.
E. Lebrun, J. M. Santini, M. Brugna, A.-L. Ducluzeau, S. Ouchane, B. Schoepp-Cothenet, F. Baymann, and W. Nitschke (2006)
Mol. Biol. Evol.
23, 1180-1191
|Abstract »|Full Text »|PDF »
Sphingomonas azotifigens sp. nov., a nitrogen-fixing bacterium isolated from the roots of Oryza sativa..
Clues from Fe Isotope Variations on the Origin of Early Archean BIFs from Greenland.
N. Dauphas, M. van Zuilen, M. Wadhwa, A. M. Davis, B. Marty, and P. E. Janney (2004)
Science
306, 2077-2080
|Abstract »|Full Text »|PDF »
Genome Organization and Localization of the pufLM Genes of the Photosynthesis Reaction Center in Phylogenetically Diverse Marine Alphaproteobacteria.
S. Pradella, M. Allgaier, C. Hoch, O. Pauker, E. Stackebrandt, and I. Wagner-Dobler (2004)
Appl. Envir. Microbiol.
70, 3360-3369
|Abstract »|Full Text »|PDF »
The bchU Gene of Chlorobium tepidum Encodes the C-20 Methyltransferase in Bacteriochlorophyll c Biosynthesis.
J. A. Maresca, A. G. Maqueo Chew, M. Ros Ponsati, N.-U. Frigaard, J. G. Ormerod, and D. A. Bryant (2004)
J. Bacteriol.
186, 2558-2566
|Abstract »|Full Text »|PDF »
DNA Sequence Duplication in Rhodobacter sphaeroides 2.4.1: Evidence of an Ancient Partnership between Chromosomes I and II.
M. Choudhary, Y.-X. Fu, C. Mackenzie, and S. Kaplan (2004)
J. Bacteriol.
186, 2019-2027
|Abstract »|Full Text »|PDF »
The Natural History of Nitrogen Fixation.
J. Raymond, J. L. Siefert, C. R. Staples, and R. E. Blankenship (2004)
Mol. Biol. Evol.
21, 541-554
|Abstract »|Full Text »|PDF »
Isotopic Constraints on Biogeochemical Cycling of Fe.
C. M. Johnson, B. L. Beard, E. E. Roden, D. K. Newman, and K. H. Nealson (2004)
Reviews in Mineralogy and Geochemistry
55, 359-408
|Full Text »|PDF »
Whole-Genome Analysis of Photosynthetic Prokaryotes.
J. Raymond, O. Zhaxybayeva, J. P. Gogarten, S. Y. Gerdes, and R. E. Blankenship (2002)
Science
298, 1616-1620
|Abstract »|Full Text »|PDF »
From the Cover: Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus.
W. Martin, T. Rujan, E. Richly, A. Hansen, S. Cornelsen, T. Lins, D. Leister, B. Stoebe, M. Hasegawa, and D. Penny (2002)
PNAS
99, 12246-12251
|Abstract »|Full Text »|PDF »
A possible evolutionary origin for the Mn4 cluster of the photosynthetic water oxidation complex from natural MnO2 precipitates in the early ocean.