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Science 18 February 2000: Vol. 287. no. 5456, pp. 1232 - 1239 DOI: 10.1126/science.287.5456.1232
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Research Articles
Crystal Structure of the Ribonucleoprotein Core of the Signal Recognition Particle
Robert T. Batey,
1
Robert P. Rambo,
1
Louise Lucast,
2
Brian Rha,
2
Jennifer A. Doudna
2*
The signal recognition particle (SRP), a protein-RNA complex
conserved in all three kingdoms of life, recognizes and transports specific proteins to cellular membranes for insertion or secretion. We
describe here the 1.8 angstrom crystal structure of the universal core
of the SRP, revealing protein recognition of a distorted RNA minor
groove. Nucleotide analog interference mapping demonstrates the
biological importance of observed interactions, and genetic results
show that this core is functional in vivo. The structure explains why
the conserved residues in the protein and RNA are required for SRP
assembly and defines a signal sequence recognition surface composed of
both protein and RNA.
1 Department of Molecular Biophysics and
Biochemistry,
2 Howard Hughes Medical Institute,
Yale University, New Haven, CT 06511, USA.
*
To whom correspondence should be addressed. E-mail:
doudna{at}csb.yale.edu
Read the Full Text
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| Full Text »
| PDF »
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| Full Text »
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| Abstract »
| Full Text »
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| Abstract »
| Full Text »
| PDF »
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30, 3368-3377
| Abstract »
| Full Text »
| PDF »
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- G. Storz (2002)
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296, 1260-1263
| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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- H. Tian and J. Beckwith (2002)
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| Abstract »
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
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| Abstract »
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| PDF »
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114, 3479-3485
| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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288, 1640-1643
| Abstract »
| Full Text »
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- J. F. Swain and L. M. Gierasch (2001)
J. Biol. Chem.
276, 12222-12227
| Abstract »
| Full Text »
| PDF »
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- R. M. Cleverley, N. Zheng, and L. M. Gierasch (2001)
J. Biol. Chem.
276, 19327-19331
| Abstract »
| Full Text »
| PDF »
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- K. Nakamura, H. Miyamoto, S. Suzuma, T. Sakamoto, G. Kawai, and K. Yamane (2001)
J. Biol. Chem.
276, 22844-22849
| Abstract »
| Full Text »
| PDF »
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- M. R. Groves, A. Mant, A. Kuhn, J. Koch, S. Dubel, C. Robinson, and I. Sinning (2001)
J. Biol. Chem.
276, 27778-27786
| Abstract »
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- H. Tian, D. Boyd, and J. Beckwith (2000)
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