Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 10 December 1999:
Vol. 286. no. 5447, pp. 2119 - 2125
DOI: 10.1126/science.286.5447.2119

Research Articles

Implication of Tubby Proteins as Transcription Factors by Structure-Based Functional Analysis

Titus J. Boggon, 1 Wei-Song Shan, 2 Sandro Santagata, 3 Samuel C. Myers, 1 Lawrence Shapiro 1*

Tubby-like proteins (TULPs) are found in a broad range of multicellular organisms. In mammals, genetic mutation of tubby or other TULPs can result in one or more of three disease phenotypes: obesity (from which the name "tubby" is derived), retinal degeneration, and hearing loss. These disease phenotypes indicate a vital role for tubby proteins; however, no biochemical function has yet been ascribed to any member of this protein family. A structure-directed approach was employed to investigate the biological function of these proteins. The crystal structure of the core domain from mouse tubby was determined at a resolution of 1.9 angstroms. From primarily structural clues, experiments were devised, the results of which suggest that TULPs are a unique family of bipartite transcription factors.

1 Structural Biology Program, Department of Physiology and Biophysics,
2 Department of Biochemistry and Molecular Biology,
3 Ruttenberg Cancer Center, Mount Sinai School of Medicine of New York University, New York, NY 10029, USA.
*   To whom correspondence should be addressed. E-mail: shapiro{at}anguilla.physbio.mssm.edu


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Mouse hitchhiker mutants have spina bifida, dorso-ventral patterning defects and polydactyly: identification of Tulp3 as a novel negative regulator of the Sonic hedgehog pathway.
V. L. Patterson, C. Damrau, A. Paudyal, B. Reeve, D. T. Grimes, M. E. Stewart, D. J. Williams, P. Siggers, A. Greenfield, and J. N. Murdoch (2009)
Hum. Mol. Genet. 18, 1719-1739
   Abstract »    Full Text »    PDF »
Tubby-like protein 3 (TULP3) regulates patterning in the mouse embryo through inhibition of Hedgehog signaling.
R. X. Norman, H. W. Ko, V. Huang, C. M. Eun, L. L. Abler, Z. Zhang, X. Sun, and J. T. Eggenschwiler (2009)
Hum. Mol. Genet. 18, 1740-1754
   Abstract »    Full Text »    PDF »
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.
A. Bateman, R. D. Finn, P. J. Sims, T. Wiedmer, A. Biegert, and J. Soding (2009)
Bioinformatics 25, 159-162
   Abstract »    Full Text »    PDF »
Novel TULP1 Mutation Causing Leber Congenital Amaurosis or Early Onset Retinal Degeneration.
A. Mataftsi, D. F. Schorderet, L. Chachoua, M. Boussalah, M. T. Nouri, D. Barthelmes, F.-X. Borruat, and F. L. Munier (2007)
Invest. Ophthalmol. Vis. Sci. 48, 5160-5167
   Abstract »    Full Text »    PDF »
Novel Compound Heterozygous TULP1 Mutations in a Family With Severe Early-Onset Retinitis Pigmentosa.
A. I. den Hollander, J. J. C. van Lith-Verhoeven, M. L. Arends, T. M. Strom, F. P. M. Cremers, and C. B. Hoyng (2007)
Arch Ophthalmol 125, 932-935
   Abstract »    Full Text »    PDF »
Interaction between the Photoreceptor-Specific Tubby-like Protein 1 and the Neuronal-Specific GTPase Dynamin-1.
Q. Xi, G. J. T. Pauer, S. L. Ball, M. Rayborn, J. G. Hollyfield, N. S. Peachey, J. W. Crabb, and S. A. Hagstrom (2007)
Invest. Ophthalmol. Vis. Sci. 48, 2837-2844
   Abstract »    Full Text »    PDF »
Tubby-like Protein 1 (TULP1) Interacts with F-actin in Photoreceptor Cells.
Q. Xi, G. J. T. Pauer, A. D. Marmorstein, J. W. Crabb, and S. A. Hagstrom (2005)
Invest. Ophthalmol. Vis. Sci. 46, 4754-4761
   Abstract »    Full Text »    PDF »
Identifying DNA-binding proteins using structural motifs and the electrostatic potential.
H. P. Shanahan, M. A. Garcia, S. Jones, and J. M. Thornton (2004)
Nucleic Acids Res. 32, 4732-4741
   Abstract »    Full Text »    PDF »
Sim1 gene dosage modulates the homeostatic feeding response to increased dietary fat in mice.
J. L. Holder Jr, L. Zhang, B. M. Kublaoui, R. J. DiLeone, O. K. Oz, C. H. Bair, Y.-H. Lee, and A. R. Zinn (2004)
Am J Physiol Endocrinol Metab 287, E105-E113
   Abstract »    Full Text »    PDF »
Catabolic action of insulin in rat arcuate nucleus is not enhanced by exogenous "tub" expression.
D. P. Figlewicz, A. Zavosh, T. Sexton, and J. F. Neumaier (2004)
Am J Physiol Endocrinol Metab 286, E1004-E1010
   Abstract »    Full Text »    PDF »
Molecular Analyses of the Arabidopsis TUBBY-Like Protein Gene Family.
C.-P. Lai, C.-L. Lee, P.-H. Chen, S.-H. Wu, C.-C. Yang, and J.-F. Shaw (2004)
Plant Physiology 134, 1586-1597
   Abstract »    Full Text »    PDF »
Membrane Recognition and Targeting by Lipid-Binding Domains.
J. P. DiNitto, T. C. Cronin, and D. G. Lambright (2003)
Sci. STKE 2003, re16
   Abstract »    Full Text »    PDF »
Leptin and Insulin Modulate Nutrient Partitioning and Weight Loss in ob/ob Mice through Regulation of Long-Chain Fatty Acid Uptake by Adipocytes.
X. Fan, M. W. Bradbury, and P. D. Berk (2003)
J. Nutr. 133, 2707-2715
   Abstract »    Full Text »    PDF »
The tubby-like proteins, a family with roles in neuronal development and function.
A. Ikeda, P. M. Nishina, and J. K. Naggert (2002)
J. Cell Sci. 115, 9-14
   Abstract »    Full Text »    PDF »
Food Choice in Hyperthyroidism: Potential Influence of the Autonomic Nervous System and Brain Serotonin Precursor Availability.
H. Pijl, P. H. E. M. de Meijer, J. Langius, C. I. G. M. Coenegracht, A. H. M. van den Berk, P. K. Chandie Shaw, H. Boom, R. C. Schoemaker, A. F. Cohen, J. Burggraaf, et al. (2001)
J. Clin. Endocrinol. Metab. 86, 5848-5853
   Abstract »    Full Text »    PDF »
A Role for the Tubby-Like Protein 1 in Rhodopsin Transport.
S. A. Hagstrom, M. Adamian, M. Scimeca, B. S. Pawlyk, G. Yue, and T. Li (2001)
Invest. Ophthalmol. Vis. Sci. 42, 1955-1962
   Abstract »    Full Text »    PDF »
Neural tube defects and neuroepithelial cell death in Tulp3 knockout mice.
A. Ikeda, S. Ikeda, T. Gridley, P. M. Nishina, and J. K. Naggert (2001)
Hum. Mol. Genet. 10, 1325-1334
   Abstract »    Full Text »    PDF »
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes.
J. L. Riechmann, J. Heard, G. Martin, L. Reuber, C. -Z., Jiang, J. Keddie, L. Adam, O. Pineda, O. J. Ratcliffe, et al. (2000)
Science 290, 2105-2110
   Abstract »    Full Text »
Localization of Tubby-like Protein 1 in Developing and Adult Human Retinas.
A. H. Milam, A. E. Hendrickson, M. Xiao, J. E. Smith, D. E. Possin, S. K. John, and P. M. Nishina (2000)
Invest. Ophthalmol. Vis. Sci. 41, 2352-2356
   Abstract »    Full Text »
Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP.
G. Minasov, M. Teplova, G. C. Stewart, E. V. Koonin, W. F. Anderson, and M. Egli (2000)
PNAS 97, 6328-6333
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)