Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 27 August 1999: Vol. 285. no. 5432, pp. 1368 - 1372 DOI: 10.1126/science.285.5432.1368
|
|
Review
Global Optimization of Clusters, Crystals, and Biomolecules
David J. Wales,
1*
Harold A. Scheraga
2
Finding the optimal solution to a complex optimization problem
is of great importance in many fields, ranging from protein structure
prediction to the design of microprocessor circuitry. Some recent
progress in finding the global minima of potential energy functions is
described, focusing on applications of the simple "basin-hopping"
approach to atomic and molecular clusters and more complicated
hypersurface deformation techniques for crystals and biomolecules.
These methods have produced promising results and should enable larger
and more complex systems to be treated in the future.
1 University Chemical Laboratories, Lensfield Road,
Cambridge, CB2 1EW, UK.
2 Baker Laboratory of Chemistry and
Chemical Biology, Cornell University, Ithaca, NY 14853-1301, USA.
*
To whom correspondence should be addressed. E-mail:
dw34{at}cus.cam.ac.uk
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Dead-End Elimination with Backbone Flexibility.
- I. Georgiev and B. R. Donald (2007)
Bioinformatics
23, i185-i194
| Abstract »
| Full Text »
| PDF »
- Destruction of long-range interactions by a single mutation in lysozyme.
- R. Zhou, M. Eleftheriou, A. K. Royyuru, and B. J. Berne (2007)
PNAS
104, 5824-5829
| Abstract »
| Full Text »
| PDF »
- Improved evolutionary optimization from genetically adaptive multimethod search.
- J. A. Vrugt and B. A. Robinson (2007)
PNAS
104, 708-711
| Abstract »
| Full Text »
| PDF »
- Conformational Study of Met-Enkephalin Based on the ECEPP Force Fields.
- L. Zhan, J. Z. Y. Chen, and W.-K. Liu (2006)
Biophys. J.
91, 2399-2404
| Abstract »
| Full Text »
| PDF »
- From The Cover: Water in protein structure prediction.
- G. A. Papoian, J. Ulander, M. P. Eastwood, Z. Luthey-Schulten, and P. G. Wolynes (2004)
PNAS
101, 3352-3357
| Abstract »
| Full Text »
| PDF »
- Global Optimization of Morse Clusters by Potential Energy Transformations.
- J. P. K. Doye, R. H. Leary, M. Locatelli, and F. Schoen (2004)
INFORMS Journal on Computing
16, 371-379
| Abstract »
| PDF »
- Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?.
- R. Zhou and B. J. Berne (2002)
PNAS
99, 12777-12782
| Abstract »
| Full Text »
| PDF »
- Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction.
- Z. Xiang, C. S. Soto, and B. Honig (2002)
PNAS
99, 7432-7437
| Abstract »
| Full Text »
| PDF »
- Investigation of routes and funnels in protein folding by free energy functional methods.
- S. S. Plotkin and J. N. Onuchic (2000)
PNAS
97, 6509-6514
| Abstract »
| Full Text »
| PDF »
- A stochastic algorithm for global optimization and for best populations: A test case of side chains in proteins.
- M. Glick, A. Rayan, and A. Goldblum (2002)
PNAS
99, 703-708
| Abstract »
| Full Text »
| PDF »
|
|