Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 7 August 1998:
Vol. 281. no. 5378, pp. 829 - 832
DOI: 10.1126/science.281.5378.829

Reports

RNA-Mediated Trans-Activation of Transcription from a Viral RNA

Tim L. Sit, Andrew A. Vaewhongs, Steven A. Lommel *

The red clover necrotic mosaic virus genome is composed of two single-stranded RNA components, RNA-1 and RNA-2. The viral capsid protein is translated from a subgenomic RNA (sgRNA) that is transcribed from genomic RNA-1. Here, a 34-nucleotide sequence in RNA-2 is shown to be required for transcription of sgRNA. Mutations that prevent base-pairing between the RNA-1 subgenomic promoter and the 34-nucleotide trans-activator prevent expression of a reporter gene. A model is proposed in which direct binding of RNA-2 to RNA-1 trans-activates sgRNA synthesis. This RNA-mediated regulation of transcription is unusual among RNA viruses, which typically rely on protein regulators.

Department of Plant Pathology, North Carolina State University, Raleigh, NC 27695-7616, USA.
*   To whom correspondence should be addressed. E-mail: steve_lommel{at}ncsu.edu


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
RNA-Based Regulation of Transcription and Translation of Aureusvirus Subgenomic mRNA1.
W. Xu and K. A. White (2009)
J. Virol. 83, 10096-10105
   Abstract »    Full Text »    PDF »
A Viral Noncoding RNA Generated by cis-Element-Mediated Protection against 5'->3' RNA Decay Represses both Cap-Independent and Cap-Dependent Translation.
H.-o. Iwakawa, H. Mizumoto, H. Nagano, Y. Imoto, K. Takigawa, S. Sarawaneeyaruk, M. Kaido, K. Mise, and T. Okuno (2008)
J. Virol. 82, 10162-10174
   Abstract »    Full Text »    PDF »
Higher-Order RNA Structural Requirements and Small-Molecule Induction of Tombusvirus Subgenomic mRNA Transcription.
S. Wang, L. Mortazavi, and K. A. White (2008)
J. Virol. 82, 3864-3871
   Abstract »    Full Text »    PDF »
Identification of a Coronavirus Transcription Enhancer.
J. L. Moreno, S. Zuniga, L. Enjuanes, and I. Sola (2008)
J. Virol. 82, 3882-3893
   Abstract »    Full Text »    PDF »
A Multicomponent RNA-Based Control System Regulates Subgenomic mRNA Transcription in a Tombusvirus.
H.-X. Lin, W. Xu, and K. A. White (2007)
J. Virol. 81, 2429-2439
   Abstract »    Full Text »    PDF »
Long-distance RNA-RNA interactions between terminal elements and the same subset of internal elements on the potato virus X genome mediate minus- and plus-strand RNA synthesis.
B. Hu, N. Pillai-Nair, and C. Hemenway (2007)
RNA 13, 267-280
   Abstract »    Full Text »    PDF »
Characterization of a Novel 5' Subgenomic RNA3a Derived from RNA3 of Brome Mosaic Bromovirus.
R. Wierzchoslawski, A. Urbanowicz, A. Dzianott, M. Figlerowicz, and J. J. Bujarski (2006)
J. Virol. 80, 12357-12366
   Abstract »    Full Text »    PDF »
trans Regulation of Cap-Independent Translation by a Viral Subgenomic RNA..
R. Shen, A. M. Rakotondrafara, and W. A. Miller (2006)
J. Virol. 80, 10045-10054
   Abstract »    Full Text »    PDF »
Nidovirus transcription: how to make sense...?.
A. O. Pasternak, W. J. M. Spaan, and E. J. Snijder (2006)
J. Gen. Virol. 87, 1403-1421
   Abstract »    Full Text »    PDF »
Cap-Independent Translation Mechanism of Red Clover Necrotic Mosaic Virus RNA2 Differs from That of RNA1 and Is Linked to RNA Replication..
H. Mizumoto, H.-o. Iwakawa, M. Kaido, K. Mise, and T. Okuno (2006)
J. Virol. 80, 3781-3791
   Abstract »    Full Text »    PDF »
Conformational changes involved in initiation of minus-strand synthesis of a virus-associated RNA.
G. ZHANG, J. ZHANG, A. T. GEORGE, T. BAUMSTARK, and A. E. SIMON (2006)
RNA 12, 147-162
   Abstract »    Full Text »    PDF »
An internal RNA element in the P3 cistron of Wheat streak mosaic virus revealed by synonymous mutations that affect both movement and replication.
I.-R. Choi, K. M. Horken, D. C. Stenger, and R. French (2005)
J. Gen. Virol. 86, 2605-2614
   Abstract »    Full Text »    PDF »
Mechanism of Stimulation of Plus-Strand Synthesis by an RNA Replication Enhancer in a Tombusvirus.
T. Panavas and P. D. Nagy (2005)
J. Virol. 79, 9777-9785
   Abstract »    Full Text »    PDF »
The Red Clover Necrotic Mosaic Virus RNA2 trans-Activator Is Also a cis-Acting RNA2 Replication Element.
M. Tatsuta, H. Mizumoto, M. Kaido, K. Mise, and T. Okuno (2005)
J. Virol. 79, 978-986
   Abstract »    Full Text »    PDF »
Replicase-Binding Sites on Plus- and Minus-Strand Brome Mosaic Virus RNAs and Their Roles in RNA Replication in Plant Cells.
S.-K. Choi, M. Hema, K. Gopinath, J. Santos, and C. Kao (2004)
J. Virol. 78, 13420-13429
   Abstract »    Full Text »    PDF »
Expression of tombusvirus open reading frames 1 and 2 is sufficient for the replication of defective interfering, but not satellite, RNA.
L. Rubino, V. Pantaleo, B. Navarro, and M. Russo (2004)
J. Gen. Virol. 85, 3115-3122
   Abstract »    Full Text »    PDF »
Dissecting the Requirement for Subgenomic Promoter Sequences by RNA Recombination of Brome Mosaic Virus In Vivo: Evidence for Functional Separation of Transcription and Recombination.
R. Wierzchoslawski, A. Dzianott, and J. Bujarski (2004)
J. Virol. 78, 8552-8564
   Abstract »    Full Text »    PDF »
Regulation of Relative Abundance of Arterivirus Subgenomic mRNAs.
A. O. Pasternak, W. J. M. Spaan, and E. J. Snijder (2004)
J. Virol. 78, 8102-8113
   Abstract »    Full Text »    PDF »
5'-3' RNA-RNA Interaction Facilitates Cap- and Poly(A) Tail-independent Translation of Tomato Bushy Stunt Virus mRNA: A POTENTIAL COMMON MECHANISM FOR TOMBUSVIRIDAE.
M. R. Fabian and K. A. White (2004)
J. Biol. Chem. 279, 28862-28872
   Abstract »    Full Text »    PDF »
Structural characterization of an intermolecular RNA-RNA interaction involved in the transcription regulation element of a bipartite plant virus.
R. H. Guenther, T. L. Sit, H. S. Gracz, M. A. Dolan, H. L. Townsend, G. Liu, W. H. Newman, P. F. Agris, and S. A. Lommel (2004)
Nucleic Acids Res. 32, 2819-2828
   Abstract »    Full Text »    PDF »
Initiation of viral RNA-dependent RNA polymerization.
A. A. van Dijk, E. V. Makeyev, and D. H. Bamford (2004)
J. Gen. Virol. 85, 1077-1093
   Abstract »    Full Text »    PDF »
Synthesis in Vitro of Rabbit Hemorrhagic Disease Virus Subgenomic RNA by Internal Initiation on (-)Sense Genomic RNA: MAPPING OF A SUBGENOMIC PROMOTER.
M. Morales, J. Barcena, M. A. Ramirez, J. A. Boga, F. Parra, and J. M. Torres (2004)
J. Biol. Chem. 279, 17013-17018
   Abstract »    Full Text »    PDF »
Rubella Virus Capsid Protein Modulates Viral Genome Replication and Virus Infectivity.
M.-H. Chen and J. P. Icenogle (2004)
J. Virol. 78, 4314-4322
   Abstract »    Full Text »    PDF »
Cap-Independent Translational Enhancement by the 3' Untranslated Region of Red Clover Necrotic Mosaic Virus RNA1.
H. Mizumoto, M. Tatsuta, M. Kaido, K. Mise, and T. Okuno (2003)
J. Virol. 77, 12113-12121
   Abstract »    Full Text »    PDF »
Effects of Modification of the Transcription Initiation Site Context on Citrus Tristeza Virus Subgenomic RNA Synthesis.
M. A. Ayllon, S. Gowda, T. Satyanarayana, A. V. Karasev, S. Adkins, M. Mawassi, J. Guerri, P. Moreno, and W. O. Dawson (2003)
J. Virol. 77, 9232-9243
   Abstract »    Full Text »    PDF »
Complementation of a Deletion in the Rubella Virus P150 Nonstructural Protein by the Viral Capsid Protein.
W.-P. Tzeng and T. K. Frey (2003)
J. Virol. 77, 9502-9510
   Abstract »    Full Text »    PDF »
Selective incorporation of influenza virus RNA segments into virions.
Y. Fujii, H. Goto, T. Watanabe, T. Yoshida, and Y. Kawaoka (2003)
PNAS 100, 2002-2007
   Abstract »    Full Text »    PDF »
Long-Distance Base Pairing in Flock House Virus RNA1 Regulates Subgenomic RNA3 Synthesis and RNA2 Replication.
B. D. Lindenbach, J.-Y. Sgro, and P. Ahlquist (2002)
J. Virol. 76, 3905-3919
   Abstract »    Full Text »    PDF »
An RNA Activator of Subgenomic mRNA1 Transcription in Tomato Bushy Stunt Virus.
I.-R. Choi and K. A. White (2002)
J. Biol. Chem. 277, 3760-3766
   Abstract »    Full Text »    PDF »
The p23 Protein of Citrus Tristeza Virus Controls Asymmetrical RNA Accumulation.
T. Satyanarayana, S. Gowda, M. A. Ayllon, M. R. Albiach-Marti, S. Rabindran, and W. O. Dawson (2002)
J. Virol. 76, 473-483
   Abstract »    Full Text »    PDF »
Effects of inactivation of the coat protein and movement genes of Tomato bushy stunt virus on early accumulation of genomic and subgenomic RNAs.
W. Qiu and H. B. Scholthof (2001)
J. Gen. Virol. 82, 3107-3114
   Abstract »    Full Text »    PDF »
Regulatory Activity of Distal and Core RNA Elements in Tombusvirus Subgenomic mRNA2 Transcription.
I.-R. Choi, M. Ostrovsky, G. Zhang, and K. A. White (2001)
J. Biol. Chem. 276, 41761-41768
   Abstract »    Full Text »    PDF »
A Single Amino Acid Mutation in the Carnation Ringspot Virus Capsid Protein Allows Virion Formation but Prevents Systemic Infection.
T. L. Sit, P. R. Haikal, A. S. Callaway, and S. A. Lommel (2001)
J. Virol. 75, 9538-9542
   Abstract »    Full Text »    PDF »
Review ArticleThe Evolution of Controlled Multitasked Gene Networks: The Role of Introns and Other Noncoding RNAs in the Development of Complex Organisms.
J. S. Mattick and M. J. Gagen (2001)
Mol. Biol. Evol. 18, 1611-1630
   Abstract »    Full Text »    PDF »
DNA-Directed Expression of Functional Flock House Virus RNA1 Derivatives in Saccharomyces cerevisiae, Heterologous Gene Expression, and Selective Effects on Subgenomic mRNA Synthesis.
B. D. Price, M. Roeder, and P. Ahlquist (2000)
J. Virol. 74, 11724-11733
   Abstract »    Full Text »
Identification and Functional Analysis of the Turnip Yellow Mosaic Tymovirus Subgenomic Promoter.
J. Schirawski, A. Voyatzakis, B. Zaccomer, F. Bernardi, and A.-L. Haenni (2000)
J. Virol. 74, 11073-11080
   Abstract »    Full Text »
Efficient and Specific Initiation of Subgenomic RNA Synthesis by Cucumber Mosaic Virus Replicase In Vitro Requires an Upstream RNA Stem-Loop.
M.-H. Chen, M. J. Roossinck, and C. C. Kao (2000)
J. Virol. 74, 11201-11209
   Abstract »    Full Text »
Generation of Subgenomic RNA Directed by a Satellite RNA Associated with Bamboo Mosaic Potexvirus: Analyses of Potexvirus Subgenomic RNA Promoter.
Y.-S. Lee, Y.-H. Hsu, and N.-S. Lin (2000)
J. Virol. 74, 10341-10348
   Abstract »    Full Text »
Asynchronous Accumulation of Lettuce Infectious Yellows Virus RNAs 1 and 2 and Identification of an RNA 1 trans Enhancer of RNA 2 Accumulation.
H.-H. Yeh, T. Tian, L. Rubio, B. Crawford, and B. W. Falk (2000)
J. Virol. 74, 5762-5768
   Abstract »    Full Text »
A Positive-Strand RNA Virus with Three Very Different Subgenomic RNA Promoters.
G. Koev and W. A. Miller (2000)
J. Virol. 74, 5988-5996
   Abstract »    Full Text »
A Novel in Vitro Replication System for Dengue Virus. INITIATION OF RNA SYNTHESIS AT THE 3'-END OF EXOGENOUS VIRAL RNA TEMPLATES REQUIRES 5'- AND 3'-TERMINAL COMPLEMENTARY SEQUENCE MOTIFS OF THE VIRAL RNA.
S. You and R. Padmanabhan (1999)
J. Biol. Chem. 274, 33714-33722
   Abstract »    Full Text »    PDF »
Regulation of Closterovirus Gene Expression Examined by Insertion of a Self-Processing Reporter and by Northern Hybridization.
Y. Hagiwara, V. V. Peremyslov, and V. V. Dolja (1999)
J. Virol. 73, 7988-7993
   Abstract »    Full Text »    PDF »
Rapid Delivery of Foreign Genes into Plants by Direct Rub-Inoculation with Intact Plasmid DNA of a Tomato Bushy Stunt Virus Gene Vector.
H. B. Scholthof (1999)
J. Virol. 73, 7823-7829
   Abstract »    Full Text »
Primary and Secondary Structural Elements Required for Synthesis of Barley Yellow Dwarf Virus Subgenomic RNA1.
G. Koev, B. R. Mohan, and W. A. Miller (1999)
J. Virol. 73, 2876-2885
   Abstract »    Full Text »
Transcriptional repression by the Caenorhabditis elegans germ-line protein PIE-1.
C. Batchelder, M. A. Dunn, B. Choy, Y. Suh, C. Cassie, E. Y. Shim, T. H. Shin, C. Mello, G. Seydoux, and T. K. Blackwell (1999)
Genes & Dev. 13, 202-212
   Abstract »    Full Text »
Formation and Amplification of a Novel Tombusvirus Defective RNA Which Lacks the 5' Nontranslated Region of the Viral Genome.
B. Wu and K. A. White (1998)
J. Virol. 72, 9897-9905
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)