Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 3 July 1998: Vol. 281. no. 5373, pp. 99 - 102 DOI: 10.1126/science.281.5373.99
|
|
Reports
C1 Transfer Enzymes and Coenzymes Linking Methylotrophic Bacteria and Methanogenic Archaea
Ludmila Chistoserdova,
Julia A. Vorholt,
Rudolf K. Thauer,
Mary E. Lidstrom
*
Methanogenic and sulfate-reducing Archaea are considered to have an
energy metabolism involving C1 transfer coenzymes and enzymes unique for this group of strictly anaerobic microorganisms. An
aerobic methylotrophic bacterium, Methylobacterium
extorquens AM1, was found to contain a cluster of genes that are
predicted to encode some of these enzymes and was shown to contain two
of the enzyme activities and one of the methanogenic coenzymes.
Insertion mutants were all unable to grow on C1 compounds,
suggesting that the archaeal enzymes function in aerobic C1
metabolism. Thus, methylotrophy and methanogenesis involve common genes
that cross the bacterial/archaeal boundaries.
L. Chistoserdova, Department of Chemical Engineering, University
of Washington, Seattle, WA 98195, USA. J. A. Vorholt and R. K. Thauer, Department of Biochemistry, Max-Planck-Institute for
Terrestrial Microbiology, Marburg 35043, Germany. M. E. Lidstrom,
Department of Chemical Engineering, Department of Microbiology,
University of Washington, Seattle, WA 98195, USA.
*
To whom correspondence should be addressed. E-mail:
lidstrom{at}u.washington.edu
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Formate as the Main Branch Point for Methylotrophic Metabolism in Methylobacterium extorquens AM1.
- G. J. Crowther, G. Kosaly, and M. E. Lidstrom (2008)
J. Bacteriol.
190, 5057-5062
| Abstract »
| Full Text »
| PDF »
- The Microbial Engines That Drive Earth's Biogeochemical Cycles.
- P. G. Falkowski, T. Fenchel, and E. F. Delong (2008)
Science
320, 1034-1039
| Abstract »
| Full Text »
| PDF »
- PhyR Is Involved in the General Stress Response of Methylobacterium extorquens AM1.
- B. Gourion, A. Francez-Charlot, and J. A. Vorholt (2008)
J. Bacteriol.
190, 1027-1035
| Abstract »
| Full Text »
| PDF »
- Genome of Methylobacillus flagellatus, Molecular Basis for Obligate Methylotrophy, and Polyphyletic Origin of Methylotrophy.
- L. Chistoserdova, A. Lapidus, C. Han, L. Goodwin, L. Saunders, T. Brettin, R. Tapia, P. Gilna, S. Lucas, P. M. Richardson, et al. (2007)
J. Bacteriol.
189, 4020-4027
| Abstract »
| Full Text »
| PDF »
- A Plasmid-Borne Truncated luxI Homolog Controls Quorum-Sensing Systems and Extracellular Carbohydrate Production in Methylobacterium extorquens AM1..
- C. G. N. Penalver, F. Cantet, D. Morin, D. Haras, and J. A. Vorholt (2006)
J. Bacteriol.
188, 7321-7324
| Abstract »
| Full Text »
| PDF »
- Bacterial Populations Active in Metabolism of C1 Compounds in the Sediment of Lake Washington, a Freshwater Lake.
- O. Nercessian, E. Noyes, M. G. Kalyuzhnaya, M. E. Lidstrom, and L. Chistoserdova (2005)
Appl. Envir. Microbiol.
71, 6885-6899
| Abstract »
| Full Text »
| PDF »
- Methylotrophic Metabolism Is Advantageous for Methylobacterium extorquens during Colonization of Medicago truncatula under Competitive Conditions.
- A. Sy, A. C. J. Timmers, C. Knief, and J. A. Vorholt (2005)
Appl. Envir. Microbiol.
71, 7245-7252
| Abstract »
| Full Text »
| PDF »
- First Genome Data from Uncultured Upland Soil Cluster Alpha Methanotrophs Provide Further Evidence for a Close Phylogenetic Relationship to Methylocapsa acidiphila B2 and for High-Affinity Methanotrophy Involving Particulate Methane Monooxygenase.
- P. Ricke, M. Kube, S. Nakagawa, C. Erkel, R. Reinhardt, and W. Liesack (2005)
Appl. Envir. Microbiol.
71, 7472-7482
| Abstract »
| Full Text »
| PDF »
- QscR-Mediated Transcriptional Activation of Serine Cycle Genes in Methylobacterium extorquens AM1.
- M. G. Kalyuzhnaya and M. E. Lidstrom (2005)
J. Bacteriol.
187, 7511-7517
| Abstract »
| Full Text »
| PDF »
- MtdC, a Novel Class of Methylene Tetrahydromethanopterin Dehydrogenases.
- J. A. Vorholt, M. G. Kalyuzhnaya, C. H. Hagemeier, M. E. Lidstrom, and L. Chistoserdova (2005)
J. Bacteriol.
187, 6069-6074
| Abstract »
| Full Text »
| PDF »
- Methanogen Diversity Evidenced by Molecular Characterization of Methyl Coenzyme M Reductase A (mcrA) Genes in Hydrothermal Sediments of the Guaymas Basin.
- A. Dhillon, M. Lever, K. G. Lloyd, D. B. Albert, M. L. Sogin, and A. Teske (2005)
Appl. Envir. Microbiol.
71, 4592-4601
| Abstract »
| Full Text »
| PDF »
- Adaptation and acclimatization to formaldehyde in methylotrophs capable of high-concentration formaldehyde detoxification.
- R. Chongcharoen, T. J. Smith, K. P. Flint, and H. Dalton (2005)
Microbiology
151, 2615-2622
| Abstract »
| Full Text »
| PDF »
- Analysis of Gene Islands Involved in Methanopterin-Linked C1 Transfer Reactions Reveals New Functions and Provides Evolutionary Insights.
- M. G. Kalyuzhnaya, N. Korotkova, G. Crowther, C. J. Marx, M. E. Lidstrom, and L. Chistoserdova (2005)
J. Bacteriol.
187, 4607-4614
| Abstract »
| Full Text »
| PDF »
- The Archaeon Pyrococcus horikoshii Possesses a Bifunctional Enzyme for Formaldehyde Fixation via the Ribulose Monophosphate Pathway.
- I. Orita, H. Yurimoto, R. Hirai, Y. Kawarabayasi, Y. Sakai, and N. Kato (2005)
J. Bacteriol.
187, 3636-3642
| Abstract »
| Full Text »
| PDF »
- How an Enzyme Binds the C1 Carrier Tetrahydromethanopterin: STRUCTURE OF THE TETRAHYDROMETHANOPTERIN-DEPENDENT FORMALDEHYDE-ACTIVATING ENZYME (Fae) FROM METHYLOBACTERIUM EXTORQUENS AM1.
- P. Acharya, M. Goenrich, C. H. Hagemeier, U. Demmer, J. A. Vorholt, R. K. Thauer, and U. Ermler (2005)
J. Biol. Chem.
280, 13712-13719
| Abstract »
| Full Text »
| PDF »
- Novel Dephosphotetrahydromethanopterin Biosynthesis Genes Discovered via Mutagenesis in Methylobacterium extorquens AM1.
- L. Chistoserdova, M. E. Rasche, and M. E. Lidstrom (2005)
J. Bacteriol.
187, 2508-2512
| Abstract »
| Full Text »
| PDF »
- OptStrain: A computational framework for redesign of microbial production systems.
- P. Pharkya, A. P. Burgard, and C. D. Maranas (2004)
Genome Res.
14, 2367-2376
| Abstract »
| Full Text »
| PDF »
- The Enigmatic Planctomycetes May Hold a Key to the Origins of Methanogenesis and Methylotrophy.
- L. Chistoserdova, C. Jenkins, M. G. Kalyuzhnaya, C. J. Marx, A. Lapidus, J. A. Vorholt, J. T. Staley, and M. E. Lidstrom (2004)
Mol. Biol. Evol.
21, 1234-1241
| Abstract »
| Full Text »
| PDF »
- Biochemical Characterization of a Dihydromethanopterin Reductase Involved in Tetrahydromethanopterin Biosynthesis in Methylobacterium extorquens AM1.
- M. A. Caccamo, C. S. Malone, and M. E. Rasche (2004)
J. Bacteriol.
186, 2068-2073
| Abstract »
| Full Text »
| PDF »
- Multiple Formaldehyde Oxidation/Detoxification Pathways in Burkholderia fungorum LB400.
- C. J. Marx, J. A. Miller, L. Chistoserdova, and M. E. Lidstrom (2004)
J. Bacteriol.
186, 2173-2178
| Abstract »
| Full Text »
| PDF »
- Characterization of Two Methanopterin Biosynthesis Mutants of Methylobacterium extorquens AM1 by Use of a Tetrahydromethanopterin Bioassay.
- M. E. Rasche, S. A. Havemann, and M. Rosenzvaig (2004)
J. Bacteriol.
186, 1565-1570
| Abstract »
| Full Text »
| PDF »
- Formaldehyde dehydrogenase preparations from Methylococcus capsulatus (Bath) comprise methanol dehydrogenase and methylene tetrahydromethanopterin dehydrogenase.
- E. K. Adeosun, T. J. Smith, A.-M. Hoberg, G. Velarde, R. Ford, and H. Dalton (2004)
Microbiology
150, 707-713
| Abstract »
| Full Text »
| PDF »
- Multiple Formate Dehydrogenase Enzymes in the Facultative Methylotroph Methylobacterium extorquens AM1 Are Dispensable for Growth on Methanol.
- L. Chistoserdova, M. Laukel, J.-C. Portais, J. A. Vorholt, and M. E. Lidstrom (2004)
J. Bacteriol.
186, 22-28
| Abstract »
| Full Text »
| PDF »
- Development of an insertional expression vector system for Methylobacterium extorquens AM1 and generation of null mutants lacking mtdA and/or fch.
- C. J. Marx and M. E. Lidstrom (2004)
Microbiology
150, 9-19
| Abstract »
| Full Text »
| PDF »
- Formaldehyde-Detoxifying Role of the Tetrahydromethanopterin-Linked Pathway in Methylobacterium extorquens AM1.
- C. J. Marx, L. Chistoserdova, and M. E. Lidstrom (2003)
J. Bacteriol.
185, 7160-7168
| Abstract »
| Full Text »
| PDF »
- Purification of the Formate-Tetrahydrofolate Ligase from Methylobacterium extorquens AM1 and Demonstration of Its Requirement for Methylotrophic Growth.
- C. J. Marx, M. Laukel, J. A. Vorholt, and M. E. Lidstrom (2003)
J. Bacteriol.
185, 7169-7175
| Abstract »
| Full Text »
| PDF »
- Evolution of the coordinate regulation of glycolytic enzyme genes by hypoxia.
- K. A. Webster (2003)
J. Exp. Biol.
206, 2911-2922
| Abstract »
| Full Text »
| PDF »
- Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.
- F. O. Glockner, M. Kube, M. Bauer, H. Teeling, T. Lombardot, W. Ludwig, D. Gade, A. Beck, K. Borzym, K. Heitmann, et al. (2003)
PNAS
100, 8298-8303
| Abstract »
| Full Text »
| PDF »
- Methylotrophy in Methylobacterium extorquens AM1 from a Genomic Point of View.
- L. Chistoserdova, S.-W. Chen, A. Lapidus, and M. E. Lidstrom (2003)
J. Bacteriol.
185, 2980-2987
| Full Text »
| PDF »
- Archaea and Their Potential Role in Human Disease.
- P. B. Eckburg, P. W. Lepp, and D. A. Relman (2003)
Infect. Immun.
71, 591-596
| Full Text »
| PDF »
- Novel Methylotrophy Genes of Methylobacterium extorquens AM1 Identified by using Transposon Mutagenesis Including a Putative Dihydromethanopterin Reductase.
- C. J. Marx, B. N. O'Brien, J. Breezee, and M. E. Lidstrom (2003)
J. Bacteriol.
185, 669-673
| Abstract »
| Full Text »
| PDF »
- Prokaryotic Evolution in Light of Gene Transfer.
- J. P. Gogarten, W. F. Doolittle, and J. G. Lawrence (2002)
Mol. Biol. Evol.
19, 2226-2238
| Abstract »
| Full Text »
| PDF »
- Crystal structures and enzymatic properties of three formyltransferases from archaea: Environmental adaptation and evolutionary relationship.
- B. Mamat, A. Roth, C. Grimm, U. Ermler, C. Tziatzios, D. Schubert, R. K. Thauer, and S. Shima (2002)
Protein Sci.
11, 2168-2178
| Abstract »
| Full Text »
| PDF »
- Purification, Overproduction, and Partial Characterization of {beta}-RFAP Synthase, a Key Enzyme in the Methanopterin Biosynthesis Pathway{dagger}.
- J. W. Scott and M. E. Rasche (2002)
J. Bacteriol.
184, 4442-4448
| Abstract »
| Full Text »
| PDF »
- Chloromethane-Induced Genes Define a Third C1 Utilization Pathway in Methylobacterium chloromethanicum CM4.
- A. Studer, C. McAnulla, R. Buchele, T. Leisinger, and S. Vuilleumier (2002)
J. Bacteriol.
184, 3476-3484
| Abstract »
| Full Text »
| PDF »
- Dichloromethane metabolism and C1 utilization genes in Methylobacterium strains.
- M. F. Kayser, Z. Ucurum, and S. Vuilleumier (2002)
Microbiology
148, 1915-1922
| Abstract »
| Full Text »
| PDF »
- Evolutionary Analysis by Whole-Genome Comparisons.
- (2002)
J. Bacteriol.
184, 2260-2272
- Membrane-Associated Quinoprotein Formaldehyde Dehydrogenase from Methylococcus capsulatus Bath.
- J. A. Zahn, D. J. Bergmann, J. M. Boyd, R. C. Kunz, and A. A. DiSpirito (2001)
J. Bacteriol.
183, 6832-6840
| Abstract »
| Full Text »
| PDF »
- Large carbon isotope fractionation associated with oxidation of methyl halides by methylotrophic bacteria.
- L. G. Miller, R. M. Kalin, S. E. McCauley, J. T. G. Hamilton, D. B. Harper, D. B. Millet, R. S. Oremland, and A. H. Goldstein (2001)
PNAS
98, 5833-5837
| Abstract »
| Full Text »
| PDF »
- Evidence that a Linear Megaplasmid Encodes Enzymes of Aliphatic Alkene and Epoxide Metabolism and Coenzyme M (2-Mercaptoethanesulfonate) Biosynthesis in Xanthobacter Strain Py2.
- J. G. Krum and S. A. Ensign (2001)
J. Bacteriol.
183, 2172-2177
| Abstract »
| Full Text »
- Novel Formaldehyde-Activating Enzyme in Methylobacterium extorquens AM1 Required for Growth on Methanol.
- J. A. Vorholt, C. J. Marx, M. E. Lidstrom, and R. K. Thauer (2000)
J. Bacteriol.
182, 6645-6650
| Abstract »
| Full Text »
- Heterologous Expression of Bacterial Epoxyalkane:Coenzyme M Transferase and Inducible Coenzyme M Biosynthesis in Xanthobacter Strain Py2 and Rhodococcus rhodochrous B276.
- J. G. Krum and S. A. Ensign (2000)
J. Bacteriol.
182, 2629-2634
| Abstract »
| Full Text »
- A Novel Operon Encoding Formaldehyde Fixation: the Ribulose Monophosphate Pathway in the Gram-Positive Facultative Methylotrophic Bacterium Mycobacterium gastri MB19.
- R. Mitsui, Y. Sakai, H. Yasueda, and N. Kato (2000)
J. Bacteriol.
182, 944-948
| Abstract »
| Full Text »
- Analysis of two formaldehyde oxidation pathways in Methylobacillus flagellatus KT, a ribulose monophosphate cycle methylotroph.
- L. Chistoserdova, L. Gomelsky, J. A. Vorholt, M. Gomelsky, Y. D. Tsygankov, and M. E. Lidstrom (2000)
Microbiology
146, 233-238
| Abstract »
| Full Text »
- Distribution of Tetrahydromethanopterin-Dependent Enzymes in Methylotrophic Bacteria and Phylogeny of Methenyl Tetrahydromethanopterin Cyclohydrolases.
- J. A. Vorholt, L. Chistoserdova, S. M. Stolyar, R. K. Thauer, and M. E. Lidstrom (1999)
J. Bacteriol.
181, 5750-5757
| Abstract »
| Full Text »
- A role for coenzyme M (2-mercaptoethanesulfonic acid) in a bacterial pathway of aliphatic epoxide carboxylation.
- J. R. Allen, D. D. Clark, J. G. Krum, and S. A. Ensign (1999)
PNAS
96, 8432-8437
| Abstract »
| Full Text »
| PDF »
- Archaebacteria Then ... Archaes Now (Are There Really No Archaeal Pathogens?).
- J. N. Reeve (1999)
J. Bacteriol.
181, 3613-3617
| Full Text »
- Function of Coenzyme F420 in Aerobic Catabolism of 2,4,6-Trinitrophenol and 2,4-Dinitrophenol by Nocardioides simplex FJ2-1A.
- S. Ebert, P.-G. Rieger, and H.-J. Knackmuss (1999)
J. Bacteriol.
181, 2669-2674
| Abstract »
| Full Text »
- A corrinoid-dependent catabolic pathway for growth of a Methylobacterium strain with chloromethane.
- T. Vannelli, M. Messmer, A. Studer, S. Vuilleumier, and T. Leisinger (1999)
PNAS
96, 4615-4620
| Abstract »
| Full Text »
| PDF »
- High-Molecular-Mass Multi-c-Heme Cytochromes from Methylococcus capsulatus Bath.
- D. J. Bergmann, J. A. Zahn, and A. A. DiSpirito (1999)
J. Bacteriol.
181, 991-997
| Abstract »
| Full Text »
- The NADP-Dependent Methylene Tetrahydromethanopterin Dehydrogenase in Methylobacterium extorquens AM1.
- J. A. Vorholt, L. Chistoserdova, M. E. Lidstrom, and R. K. Thauer (1998)
J. Bacteriol.
180, 5351-5356
| Abstract »
| Full Text »
- An archaeal genomic signature.
- D. E. Graham, R. Overbeek, G. J. Olsen, and C. R. Woese (2000)
PNAS
97, 3304-3308
| Abstract »
| Full Text »
| PDF »
|
|