Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 20 March 1998:
Vol. 279. no. 5358, pp. 1929 - 1933
DOI: 10.1126/science.279.5358.1929

Reports

Immunological Origins of Binding and Catalysis in a Diels-Alderase Antibody

Floyd E. Romesberg, * Ben Spiller, * Peter G. Schultz, dagger Raymond C. Stevens dagger

The three-dimensional structure of an antibody (39-A11) that catalyzes a Diels-Alder reaction has been determined. The structure suggests that the antibody catalyzes this pericyclic reaction through a combination of packing and hydrogen-bonding interactions that control the relative geometries of the bound substrates and electronic distribution in the dienophile. A single somatic mutation, serine-91 of the light chain to valine, is largely responsible for the increase in affinity and catalytic activity of the affinity-matured antibody. Structural and functional studies of the germ-line precursor suggest that 39-A11 and related antibodies derive from a family of germ-line genes that have been selected throughout evolution for the ability of the encoded proteins to form a polyspecific combining site. Germ line-encoded antibodies of this type, which can rapidly evolve into high-affinity receptors for a broad range of structures, may help to expand the binding potential associated with the structural diversity of the primary antibody repertoire.

F. E. Romesberg and P. G. Schultz, Howard Hughes Medical Institute and the Department of Chemistry, University of California, Berkeley, CA 94720, USA, and Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
B. Spiller and R. C. Stevens, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, and the Department of Chemistry, University of California, Berkeley, CA 94720, USA.
*   These authors contributed equally to this work.

dagger    To whom correspondence should be addressed.


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
A role for hydrophobicity in a Diels-Alder reaction catalyzed by pyridyl-modified RNA.
K. T. Gagnon, S.-Y. Ju, M. B. Goshe, E. S. Maxwell, and S. Franzen (2009)
Nucleic Acids Res. 37, 3074-3082
   Abstract »    Full Text »    PDF »
How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9.
M. Ui, Y. Tanaka, T. Tsumuraya, I. Fujii, M. Inoue, M. Hirama, and K. Tsumoto (2008)
J. Biol. Chem. 283, 19440-19447
   Abstract »    Full Text »    PDF »
Factor VIII Hydrolysis Mediated by Anti-Factor VIII Autoantibodies in Acquired Hemophilia.
B. Wootla, S. Dasgupta, J. D. Dimitrov, J. Bayry, H. Levesque, J.-Y. Borg, A. Borel-Derlon, D. N. Rao, A. Friboulet, S. V. Kaveri, et al. (2008)
J. Immunol. 180, 7714-7720
   Abstract »    Full Text »    PDF »
Natural history as a predictor of protein evolvability.
T. L. O'Loughlin, W. M. Patrick, and I. Matsumura (2006)
Protein Eng. Des. Sel. 19, 439-442
   Abstract »    Full Text »    PDF »
Toward a Better Understanding of the Basis of the Molecular Mimicry of Polysaccharide Antigens by Peptides: THE EXAMPLE OF SHIGELLA FLEXNERI 5A.
M.-J. Clement, A. Fortune, A. Phalipon, V. Marcel-Peyre, C. Simenel, A. Imberty, M. Delepierre, and L. A. Mulard (2006)
J. Biol. Chem. 281, 2317-2332
   Abstract »    Full Text »    PDF »
Recognition of Human Cytomegalovirus by Human Primary Immunoglobulins Identifies an Innate Foundation to an Adaptive Immune Response.
G. R. McLean, O. A. Olsen, I. N. Watt, P. Rathanaswami, K. B. Leslie, J. S. Babcook, and J. W. Schrader (2005)
J. Immunol. 174, 4768-4778
   Abstract »    Full Text »    PDF »
Dissecting Cooperative and Additive Binding Energetics in the Affinity Maturation Pathway of a Protein-Protein Interface.
J. Yang, C. P. Swaminathan, Y. Huang, R. Guan, S. Cho, M. C. Kieke, D. M. Kranz, R. A. Mariuzza, and E. J. Sundberg (2003)
J. Biol. Chem. 278, 50412-50421
   Abstract »    Full Text »    PDF »
Antibody Multispecificity Mediated by Conformational Diversity.
L. C. James, P. Roversi, and D. S. Tawfik (2003)
Science 299, 1362-1367
   Abstract »    Full Text »    PDF »
A structural basis for the activity of retro-Diels-Alder catalytic antibodies: Evidence for a catalytic aromatic residue.
M. Hugot, N. Bensel, M. Vogel, M. T. Reymond, B. Stadler, J.-L. Reymond, and U. Baumann (2002)
PNAS 99, 9674-9678
   Abstract »    Full Text »    PDF »
Overpassing an aberrant V{kappa} gene to sequence an anti-idiotypic abzyme with {beta}-lactamase-like activity that could have a linkage with autoimmune diseases.
H. DEBAT, B. AVALLE, O. CHOSE, C.-O. SARDE, A. FRIBOULET, and D. THOMAS (2001)
FASEB J 15, 815-822
   Abstract »    Full Text »    PDF »
Evolution of Shape Complementarity and Catalytic Efficiency from a Primordial Antibody Template.
J. Xu, Q. Deng, J. Chen, K. N. Houk, J. Bartek, D. Hilvert, and I. A. Wilson (1999)
Science 286, 2345-2348
   Abstract »    Full Text »
Molecular dynamics and free-energy calculations applied to affinity maturation in antibody 48G7.
L. T. Chong, Y. Duan, L. Wang, I. Massova, and P. A. Kollman (1999)
PNAS 96, 14330-14335
   Abstract »    Full Text »    PDF »
A structural view of evolutionary divergence.
B. Spiller, A. Gershenson, F. H. Arnold, and R. C. Stevens (1999)
PNAS 96, 12305-12310
   Abstract »    Full Text »    PDF »
Bringing biological solutions to chemical problems.
P. G. Schultz (1998)
PNAS 95, 14590-14591
   Full Text »    PDF »
A method for directed evolution and functional cloning of enzymes.
H. Pedersen, S. Holder, D. P. Sutherlin, U. Schwitter, D. S. King, and P. G. Schultz (1998)
PNAS 95, 10523-10528
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)