Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 10 November 1995:
Vol. 270. no. 5238, pp. 994 - 997
DOI: 10.1126/science.270.5238.994

Reports

Transition in Specification of Embryonic Metazoan DNA Replication Origins

Olivier Hyrien (1) (2),  Chrystelle Maric (2),  Marcel Méchali (1)

In early Xenopus embryos, in which ribosomal RNA genes (rDNA) are not transcribed, rDNA replication initiates and terminates at 9- to 12-kilobase pair intervals, with no detectable dependence on specific DNA sequences. Resumption of ribosomal RNA (rRNA) synthesis at late blastula and early gastrula is accompanied by a specific repression of replication initiation within transcription units; the frequency of initiation within intergenic spacers remains as high as in early blastula. These results demonstrate that for rRNA genes, circumscribed zones of replication initiation emerge in intergenic DNA during the time in metazoan development when the chromatin is remodeled to allow gene transcription.


Molecular Embryology, Institut Jacques Monod, 75 251 Paris Cedex 05, France.
(1) To whom correspondence should be addressed.
(2) Present address: Génétique Moléculaire, Département de Biologie, Ecole Normale Supérieure, 46 rue d'Ulm, 75230 Paris Cedex 05, France.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts.
H. Labit, I. Perewoska, T. Germe, O. Hyrien, and K. Marheineke (2008)
Nucleic Acids Res. 36, 5623-5634
   Abstract »    Full Text »    PDF »
In Xenopus Egg Extracts, DNA Replication Initiates Preferentially at or near Asymmetric AT Sequences.
S. Stanojcic, J.-M. Lemaitre, K. Brodolin, E. Danis, and M. Mechali (2008)
Mol. Cell. Biol. 28, 5265-5274
   Abstract »    Full Text »    PDF »
Human Mcm10 Regulates the Catalytic Subunit of DNA Polymerase-{alpha} and Prevents DNA Damage during Replication.
S. Chattopadhyay and A.-K. Bielinsky (2007)
Mol. Biol. Cell 18, 4085-4095
   Abstract »    Full Text »    PDF »
Low rate of replication fork progression lengthens the replication timing of a locus containing an early firing origin.
M. Benard, C. Maric, and G. Pierron (2007)
Nucleic Acids Res. 35, 5763-5774
   Abstract »    Full Text »    PDF »
Replication Fork Velocities at Adjacent Replication Origins Are Coordinately Modified during DNA Replication in Human Cells.
C. Conti, B. Sacca, J. Herrick, C. Lalou, Y. Pommier, and A. Bensimon (2007)
Mol. Biol. Cell 18, 3059-3067
   Abstract »    Full Text »    PDF »
Role of the Orc6 Protein in Origin Recognition Complex-Dependent DNA Binding and Replication in Drosophila melanogaster.
M. Balasov, R. P. H. Huijbregts, and I. Chesnokov (2007)
Mol. Cell. Biol. 27, 3143-3153
   Abstract »    Full Text »    PDF »
Perturbation of the Activity of Replication Origin by Meiosis-specific Transcription.
S. Mori and K. Shirahige (2007)
J. Biol. Chem. 282, 4447-4452
   Abstract »    Full Text »    PDF »
An Origin of DNA Replication in the Promoter Region of the Human Fragile X Mental Retardation (FMR1) Gene.
S. J. Gray, J. Gerhardt, W. Doerfler, L. E. Small, and E. Fanning (2007)
Mol. Cell. Biol. 27, 426-437
   Abstract »    Full Text »    PDF »
Identification of New Human Origins of DNA Replication by an Origin-Trapping Assay.
J. Gerhardt, S. Jafar, M.-P. Spindler, E. Ott, and A. Schepers (2006)
Mol. Cell. Biol. 26, 7731-7746
   Abstract »    Full Text »    PDF »
Cell cycle execution point analysis of ORC function and characterization of the checkpoint response to ORC inactivation in Saccharomyces cerevisiae.
D. G. Gibson, S. P. Bell, and O. M. Aparicio (2006)
Genes Cells 11, 557-573
   Abstract »    Full Text »    PDF »
Replication Initiation from a Novel Origin Identified in the Th2 Cytokine Cluster Locus Requires a Distant Conserved Noncoding Sequence.
T. Hayashida, M. Oda, K. Ohsawa, A. Yamaguchi, T. Hosozawa, R. M. Locksley, M. Giacca, H. Masai, and S. Miyatake (2006)
J. Immunol. 176, 5446-5454
   Abstract »    Full Text »    PDF »
The Croonian Lecture 2001 Hunting the antisocial cancer cell: MCM proteins and their exploitation.
R. Laskey (2005)
Phil Trans R Soc B 360, 1119-1132
   Abstract »    Full Text »    PDF »
Specific signals at the 3' end of the DHFR gene define one boundary of the downstream origin of replication.
L. D. Mesner and J. L. Hamlin (2005)
Genes & Dev. 19, 1053-1066
   Abstract »    Full Text »    PDF »
The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells.
M. G. Kemp, M. Ghosh, G. Liu, and M. Leffak (2005)
Nucleic Acids Res. 33, 325-336
   Abstract »    Full Text »    PDF »
A hypophosphorylated form of RPA34 is a specific component of pre-replication centers.
P. Francon, J.-M. Lemaitre, C. Dreyer, D. Maiorano, O. Cuvier, and M. Mechali (2004)
J. Cell Sci. 117, 4909-4920
   Abstract »    Full Text »    PDF »
Control of Replication Origin Density and Firing Time in Xenopus Egg Extracts: ROLE OF A CAFFEINE-SENSITIVE, ATR-DEPENDENT CHECKPOINT.
K. Marheineke and O. Hyrien (2004)
J. Biol. Chem. 279, 28071-28081
   Abstract »    Full Text »    PDF »
The Human {beta}-Globin Replication Initiation Region Consists of Two Modular Independent Replicators.
L. Wang, C.-M. Lin, S. Brooks, D. Cimbora, M. Groudine, and M. I. Aladjem (2004)
Mol. Cell. Biol. 24, 3373-3386
   Abstract »    Full Text »    PDF »
The promoter of the Chinese hamster ovary dihydrofolate reductase gene regulates the activity of the local origin and helps define its boundaries.
S. Saha, Y. Shan, L. D. Mesner, and J. L. Hamlin (2004)
Genes & Dev. 18, 397-410
   Abstract »    Full Text »    PDF »
Metazoan Origin Selection: ORIGIN RECOGNITION COMPLEX CHROMATIN BINDING IS REGULATED BY CDC6 RECRUITMENT AND ATP HYDROLYSIS.
K. J. Harvey and J. Newport (2003)
J. Biol. Chem. 278, 48524-48528
   Abstract »    Full Text »    PDF »
CpG Methylation of DNA Restricts Prereplication Complex Assembly in Xenopus Egg Extracts.
K. J. Harvey and J. Newport (2003)
Mol. Cell. Biol. 23, 6769-6779
   Abstract »    Full Text »    PDF »
Replication of the Chicken {beta}-Globin Locus: Early-Firing Origins at the 5' HS4 Insulator and the {rho}- and {beta}A-Globin Genes Show Opposite Epigenetic Modifications.
M.-N. Prioleau, M.-C. Gendron, and O. Hyrien (2003)
Mol. Cell. Biol. 23, 3536-3549
   Abstract »    Full Text »    PDF »
Spatial distribution and specification of mammalian replication origins during G1 phase.
F. Li, J. Chen, E. Solessio, and D. M. Gilbert (2003)
J. Cell Biol. 161, 257-266
   Abstract »    Full Text »    PDF »
Differential use of multiple replication origins in the ribosomal DNA episome of the protozoan parasite Entamoeba histolytica.
S. Ghosh, S. Satish, S. Tyagi, A. Bhattacharya, and S. Bhattacharya (2003)
Nucleic Acids Res. 31, 2035-2044
   Abstract »    Full Text »    PDF »
RPA is an initiation factor for human chromosomal DNA replication.
D. Szuts, L. Kitching, C. Christov, A. Budd, S. Peak-Chew, and T. Krude (2003)
Nucleic Acids Res. 31, 1725-1734
   Abstract »    Full Text »    PDF »
Multiple Functional Elements Comprise a Mammalian Chromosomal Replicator.
G. Liu, M. Malott, and M. Leffak (2003)
Mol. Cell. Biol. 23, 1832-1842
   Abstract »    Full Text »    PDF »
The Dihydrofolate Reductase Origin of Replication Does Not Contain Any Nonredundant Genetic Elements Required for Origin Activity.
L. D. Mesner, X. Li, P. A. Dijkwel, and J. L. Hamlin (2003)
Mol. Cell. Biol. 23, 804-814
   Abstract »    Full Text »
Developmental Changes in the Sciara II/9A Initiation Zone for DNA Replication.
V. V. Lunyak, M. Ezrokhi, H. S. Smith, and S. A. Gerbi (2002)
Mol. Cell. Biol. 22, 8426-8437
   Abstract »    Full Text »    PDF »
Site-specific and temporally controlled initiation of DNA replication in a human cell-free system.
C. Keller, O. Hyrien, R. Knippers, and T. Krude (2002)
Nucleic Acids Res. 30, 2114-2123
   Abstract »    Full Text »    PDF »
The origin recognition complex: from simple origins to complex functions.
S. P. Bell (2002)
Genes & Dev. 16, 659-672
   Full Text »    PDF »
Nuclear Organization of DNA Replication Initiation Proteins in Mammalian Cells.
M. Fujita, Y. Ishimi, H. Nakamura, T. Kiyono, and T. Tsurumi (2002)
J. Biol. Chem. 277, 10354-10361
   Abstract »    Full Text »    PDF »
Replication Initiation Patterns in the {beta}-Globin Loci of Totipotent and Differentiated Murine Cells: Evidence for Multiple Initiation Regions.
M. I. Aladjem, L. W. Rodewald, C. M. Lin, S. Bowman, D. M. Cimbora, L. L. Brody, E. M. Epner, M. Groudine, and G. M. Wahl (2002)
Mol. Cell. Biol. 22, 442-452
   Abstract »    Full Text »    PDF »
Site-Specific DNA Binding of the Schizosaccharomyces pombe Origin Recognition Complex Is Determined by the Orc4 Subunit.
D. Kong and M. L. DePamphilis (2001)
Mol. Cell. Biol. 21, 8095-8103
   Abstract »    Full Text »    PDF »
Making Sense of Eukaryotic DNA Replication Origins.
D. M. Gilbert (2001)
Science 294, 96-100
   Abstract »    Full Text »    PDF »
Replication Origins in Xenopus Egg Extract Are 5-15 Kilobases Apart and Are Activated in Clusters That Fire at Different Times.
J. J. Blow, P. J. Gillespie, D. Francis, and D. A. Jackson (2001)
J. Cell Biol. 152, 15-26
   Abstract »    Full Text »    PDF »
Rearrangement of chromatin domains during development in Xenopus.
Y. Vassetzky, A. Hair, and M. Méchali (2000)
Genes & Dev. 14, 1541-1552
   Abstract »    Full Text »
Selective activation of pre-replication complexes in vitro at specific sites in mammalian nuclei.
C. Li, J. Bogan, D. Natale, and M. DePamphilis (2000)
J. Cell Sci. 113, 887-898
   Abstract »    PDF »
Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element.
R. J. Austin, T. L. Orr-Weaver, and S. P. Bell (1999)
Genes & Dev. 13, 2639-2649
   Abstract »    Full Text »
Regulated Formation of Extrachromosomal Circular DNA Molecules during Development in Xenopus laevis.
S. Cohen, S. Menut, and M. Mechali (1999)
Mol. Cell. Biol. 19, 6682-6689
   Abstract »    Full Text »    PDF »
The inefficient replication origin from yeast ribosomal DNA is naturally impaired in the ARS consensus sequence and in DNA unwinding.
C. A. Miller, R. M. Umek, and D. Kowalski (1999)
Nucleic Acids Res. 27, 3921-3930
   Abstract »    Full Text »    PDF »
Activation of dormant origins of DNA replication in budding yeast.
C. Santocanale, K. Sharma, and J. F.X. Diffley (1999)
Genes & Dev. 13, 2360-2364
   Abstract »    Full Text »
DNA Methylation at Mammalian Replication Origins.
T. Rein, T. Kobayashi, M. Malott, M. Leffak, and M. L. DePamphilis (1999)
J. Biol. Chem. 274, 25792-25800
   Abstract »    Full Text »    PDF »
Activation of Silent Replication Origins at Autonomously Replicating Sequence Elements near the HML Locus in Budding Yeast.
M. Vujcic, C. A. Miller, and D. Kowalski (1999)
Mol. Cell. Biol. 19, 6098-6109
   Abstract »    Full Text »    PDF »
A Fission Yeast Gene, him1+/dfp1+, Encoding a Regulatory Subunit for Hsk1 Kinase, Plays Essential Roles in S-Phase Initiation as Well as in S-Phase Checkpoint Control and Recovery from DNA Damage.
T. Takeda, K. Ogino, E. Matsui, M. K. Cho, H. Kumagai, T. Miyake, K.-i. Arai, and H. Masai (1999)
Mol. Cell. Biol. 19, 5535-5547
   Abstract »    Full Text »    PDF »
DNA replication in vertebrates requires a homolog of the Cdc7 protein kinase.
B. T. Roberts, C. Y. Ying, J. Gautier, and J. L. Maller (1999)
PNAS 96, 2800-2804
   Abstract »    Full Text »    PDF »
Short DNA Fragments without Sequence Similarity Are Initiation Sites for Replication in the Chromosome of the Yeast Yarrowia lipolytica.
L. Vernis, M. Chasles, P. Pasero, A. Lepingle, C. Gaillardin, and P. Fournier (1999)
Mol. Biol. Cell 10, 757-769
   Abstract »    Full Text »
Specification of Regions of DNA Replication Initiation during Embryogenesis in the 65-Kilobase DNApolalpha -dE2F Locus of Drosophila melanogaster.
T. Sasaki, T. Sawado, M. Yamaguchi, and T. Shinomiya (1999)
Mol. Cell. Biol. 19, 547-555
   Abstract »    Full Text »    PDF »
Dynamics of the Genome during Early Xenopus laevis Development: Karyomeres As Independent Units of Replication.
J.-M. Lemaitre, G. Geraud, and M. Mechali (1998)
J. Cell Biol. 142, 1159-1166
   Abstract »    Full Text »    PDF »
Identification of Primary Initiation Sites for DNA Replication in the Hamster Dihydrofolate Reductase Gene Initiation Zone.
T. Kobayashi, T. Rein, and M. L. DePamphilis (1998)
Mol. Cell. Biol. 18, 3266-3277
   Abstract »    Full Text »
Histone H1 Reduces the Frequency of Initiation in Xenopus Egg Extract by Limiting the Assembly of Prereplication Complexes on Sperm Chromatin.
Z. H. Lu, D. B. Sittman, P. Romanowski, and G. H. Leno (1998)
Mol. Biol. Cell 9, 1163-1176
   Abstract »    Full Text »
Regulation of mammalian replication origin usage in Xenopus egg extract.
D. Dimitrova and D. Gilbert (1998)
J. Cell Sci. 111, 2989-2998
   Abstract »    PDF »
Regulation of Replicon Size in Xenopus Egg Extracts.
J. Walter and J. W. Newport (1997)
Science 275, 993-995
   Abstract »    Full Text »
Cell Cycle Control of DNA Replication.
B. Stillman (1996)
Science 274, 1659-1663
   Abstract »    Full Text »
Once and only once upon a time: specifying and regulating origins of DNA replication in eukaryotic cells..
J F Diffley (1996)
Genes & Dev. 10, 2819-2830
   PDF »
Functional compartmentalization of the nucleus.
J Strouboulis and A. Wolffe (1996)
J. Cell Sci. 109, 1991-2000
   Abstract »    PDF »
Aphidicolin Triggers a Block to Replication Origin Firing in Xenopus Egg Extracts.
K. Marheineke and O. Hyrien (2001)
J. Biol. Chem. 276, 17092-17100
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)