Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 6 October 1995:
Vol. 270. no. 5233, pp. 59 - 67
DOI: 10.1126/science.270.5233.59

Research Articles

Sulfite Reductase Structure at 1.6 Å: Evolution and Catalysis for Reduction of Inorganic Anions

Brian R. Crane,  Lewis M. Siegel,  Elizabeth D. Getzoff (1)

Fundamental chemical transformations for biogeochemical cycling of sulfur and nitrogen are catalyzed by sulfite and nitrite reductases. The crystallographic structure of Escherichia coli sulfite reductase hemoprotein (SiRHP), which catalyzes the concerted six-electron reductions of sulfite to sulfide and nitrite to ammonia, was solved with multiwavelength anomalous diffraction (MAD) of the native siroheme and Fe(4)S(4) cluster cofactors, multiple isomorphous replacement, and selenomethionine sequence markers. Twofold symmetry within the 64-kilodalton polypeptide generates a distinctive three-domain alpha/beta fold that controls cofactor assembly and reactivity. Homology regions conserved between the symmetry-related halves of SiRHP and among other sulfite and nitrite reductases revealed key residues for stability and function, and identified a sulfite or nitrite reductase repeat (SNiRR) common to a redox-enzyme superfamily. The saddle-shaped siroheme shares a cysteine thiolate ligand with the Fe(4)S(4) cluster and ligates an unexpected phosphate anion. In the substrate complex, sulfite displaces phosphate and binds to siroheme iron through sulfur. An extensive hydrogen-bonding network of positive side chains, water molecules, and siroheme carboxylates activates S-O bonds for reductive cleavage.


B. R. Crane and E. D. Getzoff are in the Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. L. M. Siegel is in the Department of Biochemistry, Duke University Medical Center, Durham, NC 27710, USA.
(1) To whom correspondence should be addressed.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Demonstration That CobG, the Monooxygenase Associated with the Ring Contraction Process of the Aerobic Cobalamin (Vitamin B12) Biosynthetic Pathway, Contains an Fe-S Center and a Mononuclear Non-heme Iron Center.
S. Schroeder, A. D. Lawrence, R. Biedendieck, R.-S. Rose, E. Deery, R. M. Graham, K. J. McLean, A. W. Munro, S. E. J. Rigby, and M. J. Warren (2009)
J. Biol. Chem. 284, 4796-4805
   Abstract »    Full Text »    PDF »
The Crystal Structure of Desulfovibrio vulgaris Dissimilatory Sulfite Reductase Bound to DsrC Provides Novel Insights into the Mechanism of Sulfate Respiration.
T. F. Oliveira, C. Vonrhein, P. M. Matias, S. S. Venceslau, I. A. C. Pereira, and M. Archer (2008)
J. Biol. Chem. 283, 34141-34149
   Abstract »    Full Text »    PDF »
Solution Structures and Backbone Dynamics of a Flavodoxin MioC from Escherichia coli in both Apo- and Holo-forms: IMPLICATIONS FOR COFACTOR BINDING AND ELECTRON TRANSFER.
Y. Hu, Y. Li, X. Zhang, X. Guo, B. Xia, and C. Jin (2006)
J. Biol. Chem. 281, 35454-35466
   Abstract »    Full Text »    PDF »
Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments..
H. Imachi, Y. Sekiguchi, Y. Kamagata, A. Loy, Y.-L. Qiu, P. Hugenholtz, N. Kimura, M. Wagner, A. Ohashi, and H. Harada (2006)
Appl. Envir. Microbiol. 72, 2080-2091
   Abstract »    Full Text »    PDF »
Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis Is a Sulfite Reductase with a Covalent Cys-Tyr Bond in the Active Site.
R. Schnell, T. Sandalova, U. Hellman, Y. Lindqvist, and G. Schneider (2005)
J. Biol. Chem. 280, 27319-27328
   Abstract »    Full Text »    PDF »
Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages.
A. Loy, K. Kusel, A. Lehner, H. L. Drake, and M. Wagner (2004)
Appl. Envir. Microbiol. 70, 6998-7009
   Abstract »    Full Text »    PDF »
Multiple Lateral Transfers of Dissimilatory Sulfite Reductase Genes between Major Lineages of Sulfate-Reducing Prokaryotes.
M. Klein, M. Friedrich, A. J. Roger, P. Hugenholtz, S. Fishbain, H. Abicht, L. L. Blackall, D. A. Stahl, and M. Wagner (2001)
J. Bacteriol. 183, 6028-6035
   Abstract »    Full Text »    PDF »
Crystal Structure of a Carbon Monoxide Dehydrogenase Reveals a [Ni-4Fe-5S] Cluster.
H. Dobbek, V. Svetlitchnyi, L. Gremer, R. Huber, and O. Meyer (2001)
Science 293, 1281-1285
   Abstract »    Full Text »    PDF »
Dissimilatory Sulfite Reductase (Desulfoviridin) of the Taurine-Degrading, Non-Sulfate-Reducing Bacterium Bilophila wadsworthia RZATAU Contains a Fused DsrB-DsrD Subunit.
H. Laue, M. Friedrich, J. Ruff, and A. M. Cook (2001)
J. Bacteriol. 183, 1727-1733
   Abstract »    Full Text »
Alteration of the Reduction Potential of the [4Fe-4S]2+/+ Cluster of Azotobacter vinelandii Ferredoxin I.
K. Chen, G. J. Tilley, V. Sridhar, G. S. Prasad, C. D. Stout, F. A. Armstrong, and B. K. Burgess (1999)
J. Biol. Chem. 274, 36479-36487
   Abstract »    Full Text »    PDF »
X-ray Crystal Structure of the Fe-Only Hydrogenase (CpI) from Clostridium pasteurianum to 1.8 Angstrom Resolution.
J. W. Peters, W. N. Lanzilotta, B. J. Lemon, and L. C. Seefeldt (1998)
Science 282, 1853-1858
   Abstract »    Full Text »
Phylogeny of Dissimilatory Sulfite Reductases Supports an Early Origin of Sulfate Respiration.
M. Wagner, A. J. Roger, J. L. Flax, G. A. Brusseau, and D. A. Stahl (1998)
J. Bacteriol. 180, 2975-2982
   Abstract »    Full Text »
Iron-Sulfur Clusters: Nature's Modular, Multipurpose Structures.
H. Beinert, R. H. Holm, and E. Münck (1997)
Science 277, 653-659
   Abstract »    Full Text »
Ferredoxin and ferredoxin-heme maquettes.
B. R. Gibney, S. E. Mulholland, F. Rabanal, and P. L. Dutton (1996)
PNAS 93, 15041-15046
   Abstract »    Full Text »    PDF »
Three-dimensional structure of human electron transfer flavoprotein to 2.1-A resolution.
D. L. Roberts, F. E. Frerman, and J.-J. P. Kim (1996)
PNAS 93, 14355-14360
   Abstract »    Full Text »    PDF »
Functional Dissection and Site-directed Mutagenesis of the Structural Gene for NAD(P)H-Nitrite Reductase in Neurospora crassa.
J. D. Colandene and R. H. Garrett (1996)
J. Biol. Chem. 271, 24096-24104
   Abstract »    Full Text »    PDF »
Metal-Carbon Bonds in Nature.
J. A. Kovacs, S. C. Shoner, and J. J. Ellison (1995)
Science 270, 587-588
   Abstract »    PDF »
A Simplifed Functional Version of the Escherichia coli Sulfite Reductase.
M. Zeghouf, M. Fontecave, and J. Coves (2000)
J. Biol. Chem. 275, 37651-37656
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)