Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 11 August 1995:
Vol. 269. no. 5225, pp. 807 - 813
DOI: 10.1126/science.7638597

Articles

Science, Vol 269, Issue 5225, 807-813
Copyright © 1995 by American Association for the Advancement of Science


articles

Regulatory subunit of protein kinase A: structure of deletion mutant with cAMP binding domains

Y Su, WR Dostmann, FW Herberg, K Durick, NH Xuong, L Ten Eyck, SS Taylor, and KI Varughese

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla 92093-0654, USA.

In the molecular scheme of living organisms, adenosine 3',5'-monophosphate (cyclic AMP or cAMP) has been a universal second messenger. In eukaryotic cells, the primary receptors for cAMP are the regulatory subunits of cAMP-dependent protein kinase. The crystal structure of a 1-91 deletion mutant of the type I alpha regulatory subunit was refined to 2.8 A resolution. Each of the two tandem cAMP binding domains provides an extensive network of hydrogen bonds that buries the cyclic phosphate and the ribose between two beta strands that are linked by a short alpha helix. Each adenine base stacks against an aromatic ring that lies outside the beta barrel. This structure provides a molecular basis for understanding how cAMP binds cooperatively to its receptor protein, thus mediating activation of the kinase.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Entropy-driven cAMP-dependent Allosteric Control of Inhibitory Interactions in Exchange Proteins Directly Activated by cAMP.
R. Das, M. T. Mazhab-Jafari, S. Chowdhury, S. SilDas, R. Selvaratnam, and G. Melacini (2008)
J. Biol. Chem. 283, 19691-19703
   Abstract »    Full Text »    PDF »
Significant Role for ladC in Initiation of Legionella pneumophila Infection.
H. J. Newton, F. M. Sansom, J. Dao, C. Cazalet, H. Bruggemann, C. Albert-Weissenberger, C. Buchrieser, N. P. Cianciotto, and E. L. Hartland (2008)
Infect. Immun. 76, 3075-3085
   Abstract »    Full Text »    PDF »
Structural Dynamics in the Activation of Epac.
S. M. Harper, H. Wienk, R. W. Wechselberger, J. L. Bos, R. Boelens, and H. Rehmann (2008)
J. Biol. Chem. 283, 6501-6508
   Abstract »    Full Text »    PDF »
Conformational Analysis of Epac Activation Using Amide Hydrogen/Deuterium Exchange Mass Spectrometry.
M. Brock, F. Fan, F. C. Mei, S. Li, C. Gessner, V. L. Woods Jr., and X. Cheng (2007)
J. Biol. Chem. 282, 32256-32263
   Abstract »    Full Text »    PDF »
PKA Type II{alpha} Holoenzyme Reveals a Combinatorial Strategy for Isoform Diversity.
J. Wu, S. H. J. Brown, S. von Daake, and S. S. Taylor (2007)
Science 318, 274-279
   Abstract »    Full Text »    PDF »
Cyclic AMP Directly Activates NasP, an N-Acyl Amino Acid Antibiotic Biosynthetic Enzyme Cloned from an Uncultured {beta}-Proteobacterium.
J. Clardy and S. F. Brady (2007)
J. Bacteriol. 189, 6487-6489
   Abstract »    Full Text »    PDF »
Mechanisms Regulating the Protein Kinases of Saccharomyces cerevisiae.
E. M. Rubenstein and M. C. Schmidt (2007)
Eukaryot. Cell 6, 571-583
   Full Text »    PDF »
A Model for Agonism and Antagonism in an Ancient and Ubiquitous cAMP-binding Domain.
R. Das and G. Melacini (2007)
J. Biol. Chem. 282, 581-593
   Abstract »    Full Text »    PDF »
cAMP activation of PKA defines an ancient signaling mechanism.
R. Das, V. Esposito, M. Abu-Abed, G. S. Anand, S. S. Taylor, and G. Melacini (2007)
PNAS 104, 93-98
   Abstract »    Full Text »    PDF »
CprK Crystal Structures Reveal Mechanism for Transcriptional Control of Halorespiration.
M. G. Joyce, C. Levy, K. Gabor, S. M. Pop, B. D. Biehl, T. I. Doukov, J. M. Ryter, H. Mazon, H. Smidt, R. H. H. van den Heuvel, et al. (2006)
J. Biol. Chem. 281, 28318-28325
   Abstract »    Full Text »    PDF »
Epac1 and cAMP-dependent Protein Kinase Holoenzyme Have Similar cAMP Affinity, but Their cAMP Domains Have Distinct Structural Features and Cyclic Nucleotide Recognition.
K. K. Dao, K. Teigen, R. Kopperud, E. Hodneland, F. Schwede, A. E. Christensen, A. Martinez, and S. O. Doskeland (2006)
J. Biol. Chem. 281, 21500-21511
   Abstract »    Full Text »    PDF »
Most LQT2 Mutations Reduce Kv11.1 (hERG) Current by a Class 2 (Trafficking-Deficient) Mechanism.
C. L. Anderson, B. P. Delisle, B. D. Anson, J. A. Kilby, M. L. Will, D. J. Tester, Q. Gong, Z. Zhou, M. J. Ackerman, and C. T. January (2006)
Circulation 113, 365-373
   Abstract »    Full Text »    PDF »
The Conformationally Dynamic C Helix of the RI{alpha} Subunit of Protein Kinase A Mediates Isoform-specific Domain Reorganization upon C Subunit Binding.
D. Vigil, D. K. Blumenthal, S. S. Taylor, and J. Trewhella (2005)
J. Biol. Chem. 280, 35521-35527
   Abstract »    Full Text »    PDF »
PKA-Dependent and PKA-Independent Pathways for cAMP-Regulated Exocytosis.
S. Seino and T. Shibasaki (2005)
Physiol Rev 85, 1303-1342
   Abstract »    Full Text »    PDF »
Crystal Structure of a Complex Between the Catalytic and Regulatory (RI{alpha}) Subunits of PKA.
C. Kim, N.-H. Xuong, and S. S. Taylor (2005)
Science 307, 690-696
   Abstract »    Full Text »    PDF »
The cAMP binding domain: An ancient signaling module.
H. M. Berman, L. F. Ten Eyck, D. S. Goodsell, N. M. Haste, A. Kornev, and S. S. Taylor (2005)
PNAS 102, 45-50
   Abstract »    Full Text »    PDF »
C Subunits Binding to the Protein Kinase A RI{alpha} Dimer Induce a Large Conformational Change.
W. T. Heller, D. Vigil, S. Brown, D. K. Blumenthal, S. S. Taylor, and J. Trewhella (2004)
J. Biol. Chem. 279, 19084-19090
   Abstract »    Full Text »    PDF »
Interaction of ATP Sensor, cAMP Sensor, Ca2+ Sensor, and Voltage-dependent Ca2+ Channel in Insulin Granule Exocytosis.
T. Shibasaki, Y. Sunaga, K. Fujimoto, Y. Kashima, and S. Seino (2004)
J. Biol. Chem. 279, 7956-7961
   Abstract »    Full Text »    PDF »
cAMP-dependent Protein Kinase Regulatory Subunit Type II{beta}: ACTIVE SITE MUTATIONS DEFINE AN ISOFORM-SPECIFIC NETWORK FOR ALLOSTERIC SIGNALING BY cAMP.
K. M. Zawadzki and S. S. Taylor (2004)
J. Biol. Chem. 279, 7029-7036
   Abstract »    Full Text »    PDF »
Properties and Functions of GAF Domains in Cyclic Nucleotide Phosphodiesterases and Other Proteins.
R. Zoraghi, J. D. Corbin, and S. H. Francis (2004)
Mol. Pharmacol. 65, 267-278
   Full Text »    PDF »
Distinct Structural Determinants of Efficacy and Sensitivity in the Ligand-binding Domain of Cyclic Nucleotide-gated Channels.
E. C. Young and N. Krougliak (2004)
J. Biol. Chem. 279, 3553-3562
   Abstract »    Full Text »    PDF »
Identification of the protein kinase A regulatory RI{alpha}-catalytic subunit interface by amide H/2H exchange and protein docking.
G. S. Anand, D. Law, J. G. Mandell, A. N. Snead, I. Tsigelny, S. S. Taylor, L. F. T. Eyck, and E. A. Komives (2003)
PNAS 100, 13264-13269
   Abstract »    Full Text »    PDF »
Ligand-mediated Activation of the cAMP-responsive Guanine Nucleotide Exchange Factor Epac.
H. Rehmann, F. Schwede, S. O. Doskeland, A. Wittinghofer, and J. L. Bos (2003)
J. Biol. Chem. 278, 38548-38556
   Abstract »    Full Text »    PDF »
cAMP Analog Mapping of Epac1 and cAMP Kinase: DISCRIMINATING ANALOGS DEMONSTRATE THAT Epac AND cAMP KINASE ACT SYNERGISTICALLY TO PROMOTE PC-12 CELL NEURITE EXTENSION.
A. E. Christensen, F. Selheim, J. de Rooij, S. Dremier, F. Schwede, K. K. Dao, A. Martinez, C. Maenhaut, J. L. Bos, H.-G. Genieser, et al. (2003)
J. Biol. Chem. 278, 35394-35402
   Abstract »    Full Text »    PDF »
Activation of JNK by Epac Is Independent of Its Activity as a Rap Guanine Nucleotide Exchanger.
D. Hochbaum, T. Tanos, F. Ribeiro-Neto, D. Altschuler, and O. A. Coso (2003)
J. Biol. Chem. 278, 33738-33746
   Abstract »    Full Text »    PDF »
Communication between the Regulatory and the Catalytic Region of the cAMP-responsive Guanine Nucleotide Exchange Factor Epac.
H. Rehmann, A. Rueppel, J. L. Bos, and A. Wittinghofer (2003)
J. Biol. Chem. 278, 23508-23514
   Abstract »    Full Text »    PDF »
Characterization of a cAMP-stimulated cAMP Phosphodiesterase in Dictyostelium discoideum.
M. E. Meima, K. E. Weening, and P. Schaap (2003)
J. Biol. Chem. 278, 14356-14362
   Abstract »    Full Text »    PDF »
Functional Roles of Loops 3 and 4 in the Cyclic Nucleotide Binding Domain of Cyclic AMP Receptor Protein from Escherichia coli.
R. Chen and J. C. Lee (2003)
J. Biol. Chem. 278, 13235-13243
   Abstract »    Full Text »    PDF »
Mechanisms associated with cGMP binding and activation of cGMP-dependent protein kinase.
M. E. Wall, S. H. Francis, J. D. Corbin, K. Grimes, R. Richie-Jannetta, J. Kotera, B. A. Macdonald, R. R. Gibson, and J. Trewhella (2003)
PNAS 100, 2380-2385
   Abstract »    Full Text »    PDF »
Intracellular Targeting of Protein Kinases and Phosphatases.
N. Alto, J. J. Carlisle Michel, K. L. Dodge, L. K. Langeberg, and J. D. Scott (2002)
Diabetes 51, S385-388
   Abstract »    Full Text »    PDF »
Identification of a Novel Type of cGMP Phosphodiesterase That Is Defective in the Chemotactic stmF Mutants.
M. E. Meima, R. M. Biondi, and P. Schaap (2002)
Mol. Biol. Cell 13, 3870-3877
   Abstract »    Full Text »    PDF »
Cyclic AMP-dependent protein kinase is involved in morphogenesis of Aspergillus niger.
M. Saudohar, M. Bencina, P. J.I van de Vondervoort, H. Panneman, M. Legisa, J. Visser, and G. J. G. Ruijter (2002)
Microbiology 148, 2635-2645
   Abstract »    Full Text »    PDF »
Mechanism of calcium/calmodulin inhibition of rod cyclic nucleotide-gated channels.
M. C. Trudeau and W. N. Zagotta (2002)
PNAS 99, 8424-8429
   Abstract »    Full Text »    PDF »
Identification of four candidate cGMP targets in Dictyostelium.
J. M. Goldberg, L. Bosgraaf, P. J. M. Van Haastert, and J. L. Smith (2002)
PNAS 99, 6749-6754
   Abstract »    Full Text »    PDF »
Purification and Molecular Characterization of cGMP-dependent Protein Kinase from Apicomplexan Parasites. A NOVEL CHEMOTHERAPEUTIC TARGET.
A. M. Gurnett, P. A. Liberator, P. M. Dulski, S. P. Salowe, R. G. K. Donald, J. W. Anderson, J. Wiltsie, C. A. Diaz, G. Harris, B. Chang, et al. (2002)
J. Biol. Chem. 277, 15913-15922
   Abstract »    Full Text »    PDF »
A Structural Model of the Catalytic Subunit-regulatory Subunit Dimeric Complex of the cAMP-dependent Protein Kinase.
C.-S. Tung, D. A. Walsh, and J. Trewhella (2002)
J. Biol. Chem. 277, 12423-12431
   Abstract »    Full Text »    PDF »
Differential Signaling of Cyclic AMP. OPPOSING EFFECTS OF EXCHANGE PROTEIN DIRECTLY ACTIVATED BY CYCLIC AMP AND cAMP-DEPENDENT PROTEIN KINASE ON PROTEIN KINASE B ACTIVATION.
F. C. Mei, J. Qiao, O. M. Tsygankova, J. L. Meinkoth, L. A. Quilliam, and X. Cheng (2002)
J. Biol. Chem. 277, 11497-11504
   Abstract »    Full Text »    PDF »
Identification and Characterization of a Developmentally Regulated Protein, EshA, Required for Sporogenic Hyphal Branches in Streptomyces griseus.
J. Kwak, L. A. McCue, K. Trczianka, and K. E. Kendrick (2001)
J. Bacteriol. 183, 3004-3015
   Abstract »    Full Text »
Simultaneous measurements of intracellular cAMP and L-type Ca2+ current in single frog ventricular myocytes.
J.-M. Goaillard, P. Vincent, and R. Fischmeister (2001)
J. Physiol. 530, 79-91
   Abstract »    Full Text »    PDF »
Functional Classification of cNMP-binding Proteins and Nucleotide Cyclases with Implications for Novel Regulatory Pathways in Mycobacterium tuberculosis.
L. A. McCue, K. A. McDonough, and C. E. Lawrence (2000)
Genome Res. 10, 204-219
   Abstract »    Full Text »
PDZ-GEF1, a Guanine Nucleotide Exchange Factor Specific for Rap1 and Rap2.
J. de Rooij, N. M. Boenink, M. van Triest, R. H. Cool, A. Wittinghofer, and J. L. Bos (1999)
J. Biol. Chem. 274, 38125-38130
   Abstract »    Full Text »    PDF »
Studies of the Molecular Mechanism of Discrimination between cGMP and cAMP in the Allosteric Sites of the cGMP-binding cGMP-specific Phosphodiesterase (PDE5).
I. V. Turko, S. H. Francis, and J. D. Corbin (1999)
J. Biol. Chem. 274, 29038-29041
   Abstract »    Full Text »    PDF »
Functional Roles of Aromatic Residues in the Ligand-Binding Domain of Cyclic Nucleotide-Gated Channels.
J. Li and H. A. Lester (1999)
Mol. Pharmacol. 55, 873-882
   Abstract »    Full Text »
Dimerization/Docking Domain of the Type Ialpha Regulatory Subunit of cAMP-dependent Protein Kinase. REQUIREMENTS FOR DIMERIZATION AND DOCKING ARE DISTINCT BUT OVERLAPPING.
P. Banky, L. J.-S. Huang, and S. S. Taylor (1998)
J. Biol. Chem. 273, 35048-35055
   Abstract »    Full Text »    PDF »
Quaternary Structures of a Catalytic Subunit-Regulatory Subunit Dimeric Complex and the Holoenzyme of the cAMP-dependent Protein Kinase by Neutron Contrast Variation.
J. Zhao, E. Hoye, S. Boylan, D. A. Walsh, and J. Trewhella (1998)
J. Biol. Chem. 273, 30448-30459
   Abstract »    Full Text »    PDF »
Dissecting cAMP Binding Domain A in the RIalpha Subunit of cAMP-dependent Protein Kinase. DISTINCT SUBSITES FOR RECOGNITION OF cAMP AND THE CATALYTIC SUBUNIT.
L. J.-s. Huang and S. S. Taylor (1998)
J. Biol. Chem. 273, 26739-26746
   Abstract »    Full Text »    PDF »
In Vitro Effects of Oxygen-derived Free Radicals on Type I and Type II cAMP-Dependent Protein Kinases.
S. Dimon-Gadal, P. Gerbaud, G. Keryer, W. Anderson, D. Evain-Brion, and F. Raynaud (1998)
J. Biol. Chem. 273, 22833-22840
   Abstract »    Full Text »    PDF »
Divergent cAMP Signaling Pathways Regulate Growth and Pathogenesis in the Rice Blast Fungus Magnaporthe grisea.
K. Adachi and J. E. Hamer (1998)
PLANT CELL 10, 1361-1374
   Abstract »    Full Text »
Activation by Autophosphorylation or cGMP Binding Produces a Similar Apparent Conformational Change in cGMP-dependent Protein Kinase.
D.-M. Chu, S. H. Francis, J. W. Thomas, E. A. Maksymovitch, M. Fosler, and J. D. Corbin (1998)
J. Biol. Chem. 273, 14649-14656
   Abstract »    Full Text »    PDF »
Potential Roles of Conserved Amino Acids in the Catalytic Domain of the cGMP-binding cGMP-specific Phosphodiesterase (PDE5).
I. V. Turko, S. H. Francis, and J. D. Corbin (1998)
J. Biol. Chem. 273, 6460-6466
   Abstract »    Full Text »    PDF »
A State-independent Interaction between Ligand and a Conserved Arginine Residue in Cyclic Nucleotide-gated Channels Reveals a Functional Polarity of the Cyclic Nucleotide Binding Site.
G. R. Tibbs, D. T. Liu, B. G. Leypold, and S. A. Siegelbaum (1998)
J. Biol. Chem. 273, 4497-4505
   Abstract »    Full Text »    PDF »
Dissecting the Cooperative Reassociation of the Regulatory and Catalytic Subunits of cAMP-dependent Protein Kinase. ROLE OF Trp-196 IN THE CATALYTIC SUBUNIT.
R. M. Gibson and S. S. Taylor (1997)
J. Biol. Chem. 272, 31998-32005
   Abstract »    Full Text »    PDF »
Activation by Cyclic GMP Binding Causes an Apparent Conformational Change in cGMP-dependent Protein Kinase.
D.-M. Chu, J. D. Corbin, K. A. Grimes, and S. H. Francis (1997)
J. Biol. Chem. 272, 31922-31928
   Abstract »    Full Text »    PDF »
Progressive Cyclic Nucleotide-induced Conformational Changes in the cGMP-dependent Protein Kinase Studied by Small Angle X-ray Scattering in Solution.
J. Zhao, J. Trewhella, J. Corbin, S. Francis, R. Mitchell, R. Brushia, and D. Walsh (1997)
J. Biol. Chem. 272, 31929-31936
   Abstract »    Full Text »    PDF »
The A-kinase Anchoring Domain of Type IIalpha cAMP-dependent Protein Kinase Is Highly Helical.
M. G. Newlon, M. Roy, Z. E. Hausken, J. D. Scott, and P. A. Jennings (1997)
J. Biol. Chem. 272, 23637-23644
   Abstract »    Full Text »    PDF »
Interaction of the Regulatory and Catalytic Subunits of cAMP-dependent Protein Kinase. ELECTROSTATIC SITES ON THE TYPE Ialpha REGULATORY SUBUNIT.
R. M. Gibson, Y. Ji-Buechler, and S. S. Taylor (1997)
J. Biol. Chem. 272, 16343-16350
   Abstract »    Full Text »    PDF »
Identification of the Amino Acid Sequences Responsible for High Affinity Activation of cGMP Kinase Ialpha.
P. Ruth, A. Pfeifer, S. Kamm, P. Klatt, W. R.G. Dostmann, and F. Hofmann (1997)
J. Biol. Chem. 272, 10522-10528
   Abstract »    Full Text »    PDF »
Mutational Analysis of the A-Kinase Anchoring Protein (AKAP)-binding Site on RII. CLASSIFICATION OF SIDE CHAIN DETERMINANTS FOR ANCHORING AND ISOFORM SELECTIVE ASSOCIATION WITH AKAPs.
Z. E. Hausken, M. L. Dell'Acqua, V. M. Coghlan, and J. D. Scott (1996)
J. Biol. Chem. 271, 29016-29022
   Abstract »    Full Text »    PDF »
Arginine 210Is Not a Critical Residue for the Allosteric Interactions Mediated by Binding of Cyclic AMP to Site A of Regulatory (RIalpha ) Subunit of Cyclic AMP-dependent Protein Kinase.
R. A. Steinberg, M. M. Symcox, S. Sollid, and D. Ogreid (1996)
J. Biol. Chem. 271, 27630-27636
   Abstract »    Full Text »    PDF »
Identification of Key Amino Acids in a Conserved cGMP-binding Site of cGMP-binding Phosphodiesterases. A PUTATIVE NKXnD MOTIF FOR cGMP BINDING.
I. V. Turko, T. L. Haik, L. M. McAllister-Lucas, F. Burns, S. H. Francis, and J. D. Corbin (1996)
J. Biol. Chem. 271, 22240-22244
   Abstract »    Full Text »    PDF »
Fast and Slow Cyclic Nucleotide-dissociation Sites in cAMP-dependent Protein Kinase Are Transposed in Type Ibeta cGMP-dependent Protein Kinase.
R. B. Reed, M. Sandberg, T. Jahnsen, S. M. Lohmann, S. H. Francis, and J. D. Corbin (1996)
J. Biol. Chem. 271, 17570-17575
   Abstract »    Full Text »    PDF »
Mechanism of Regulation of the Epac Family of cAMP-dependent RapGEFs.
J. de Rooij, H. Rehmann, M. van Triest, R. H. Cool, A. Wittinghofer, and J. L. Bos (2000)
J. Biol. Chem. 275, 20829-20836
   Abstract »    Full Text »    PDF »
The Amino-terminal Cyclic Nucleotide Binding Site of the Type II cGMP-dependent Protein Kinase Is Essential for Full Cyclic Nucleotide-dependent Activation.
M. K. Taylor and M. D. Uhler (2000)
J. Biol. Chem. 275, 28053-28062
   Abstract »    Full Text »    PDF »
Differences between Cystic Fibrosis Transmembrane Conductance Regulator and HisP in the Interaction with the Adenine Ring of ATP.
A. L. Berger and M. J. Welsh (2000)
J. Biol. Chem. 275, 29407-29412
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)