Science 28 July 1995: Vol. 269. no. 5223, pp. 496 - 512 DOI: 10.1126/science.7542800

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Articles

Genome Sequencing and Comparative Analysis of Klebsiella pneumoniae NTUH-K2044, a Strain Causing Liver Abscess and Meningitis.

K.-M. Wu, L.-H. Li, J.-J. Yan, N. Tsao, T.-L. Liao, H.-C. Tsai, C.-P. Fung, H.-J. Chen, Y.-M. Liu, J.-T. Wang, et al. (2009)
J. Bacteriol. 191, 4492-4501
 |  Abstract »  |  Full Text »  |  PDF »

Resistance of Haemophilus influenzae to Reactive Nitrogen Donors and Gamma Interferon-Stimulated Macrophages Requires the Formate-Dependent Nitrite Reductase Regulator-Activated ytfE Gene.

J. C. Harrington, S. M. S. Wong, C. V. Rosadini, O. Garifulin, V. Boyartchuk, and B. J. Akerley (2009)
Infect. Immun. 77, 1945-1958
 |  Abstract »  |  Full Text »  |  PDF »

An Aeromonas caviae Genomic Island Is Required for both O-Antigen Lipopolysaccharide Biosynthesis and Flagellin Glycosylation.

S. M. B. Tabei, P. G. Hitchen, M. J. Day-Williams, S. Merino, R. Vart, P.-C. Pang, G. J. Horsburgh, S. Viches, M. Wilhelms, J. M. Tomas, et al. (2009)
J. Bacteriol. 191, 2851-2863
 |  Abstract »  |  Full Text »  |  PDF »

Bacterial variation, virulence and vaccines.

E. R. Moxon (2009)
Microbiology 155, 997-1003
 |  Abstract »  |  Full Text »  |  PDF »

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.

M. J. Fullwood, C.-L. Wei, E. T. Liu, and Y. Ruan (2009)
Genome Res. 19, 521-532
 |  Abstract »  |  Full Text »  |  PDF »

Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria.

B. Gao, R. Mohan, and R. S. Gupta (2009)
Int J Syst Evol Microbiol 59, 234-247
 |  Abstract »  |  Full Text »  |  PDF »

Delineation of the Species Haemophilus influenzae by Phenotype, Multilocus Sequence Phylogeny, and Detection of Marker Genes.

N. Norskov-Lauritsen, M. D. Overballe, and M. Kilian (2009)
J. Bacteriol. 191, 822-831
 |  Abstract »  |  Full Text »  |  PDF »

Using shotgun sequence data to find active restriction enzyme genes.

Y. Zheng, J. Posfai, R. D. Morgan, T. Vincze, and R. J. Roberts (2009)
Nucleic Acids Res. 37, e1
 |  Abstract »  |  Full Text »  |  PDF »

Assessing the gene space in draft genomes.

G. Parra, K. Bradnam, Z. Ning, T. Keane, and I. Korf (2009)
Nucleic Acids Res. 37, 289-297
 |  Abstract »  |  Full Text »  |  PDF »

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.

T. Lima, A. H. Auchincloss, E. Coudert, G. Keller, K. Michoud, C. Rivoire, V. Bulliard, E. de Castro, C. Lachaize, D. Baratin, et al. (2009)
Nucleic Acids Res. 37, D471-D478
 |  Abstract »  |  Full Text »  |  PDF »

The National Center for Biotechnology Information's Protein Clusters Database.

W. Klimke, R. Agarwala, A. Badretdin, S. Chetvernin, S. Ciufo, B. Fedorov, B. Kiryutin, K. O'Neill, W. Resch, S. Resenchuk, et al. (2009)
Nucleic Acids Res. 37, D216-D223
 |  Abstract »  |  Full Text »  |  PDF »

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes.

R. Zhang and Y. Lin (2009)
Nucleic Acids Res. 37, D455-D458
 |  Abstract »  |  Full Text »  |  PDF »

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.

E. V. Koonin and Y. I. Wolf (2008)
Nucleic Acids Res. 36, 6688-6719
 |  Abstract »  |  Full Text »  |  PDF »

Association of IS1016 with the hia Adhesin Gene and Biotypes V and I in Invasive Nontypeable Haemophilus influenzae.

S. W. Satola, B. Napier, and M. M. Farley (2008)
Infect. Immun. 76, 5221-5227
 |  Abstract »  |  Full Text »  |  PDF »

Invited review: Profiling structural elements of short-chain lipopolysaccharide of non-typeable Haemophilus influenzae.

E. K.H. Schweda, B. Twelkmeyer, and Jianjun Li (2008)
Innate Immunity 14, 199-211
 |  Abstract »  |  PDF »

Antibiotic Resistance in Haemophilus influenzae Decreased, except for {beta}-Lactamase-Negative Amoxicillin-Resistant Isolates, in Parallel with Community Antibiotic Consumption in Spain from 1997 to 2007.

S. Garcia-Cobos, J. Campos, E. Cercenado, F. Roman, E. Lazaro, M. Perez-Vazquez, F. de Abajo, and J. Oteo (2008)
Antimicrob. Agents Chemother. 52, 2760-2766
 |  Abstract »  |  Full Text »  |  PDF »

Low {beta}-Lactamase-Negative Ampicillin-Resistant Haemophilus influenzae Strains Are Best Detected by Testing Amoxicillin Susceptibility by the Broth Microdilution Method.

S. Garcia-Cobos, J. Campos, F. Roman, C. Carrera, M. Perez-Vazquez, B. Aracil, and J. Oteo (2008)
Antimicrob. Agents Chemother. 52, 2407-2414
 |  Abstract »  |  Full Text »  |  PDF »

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes.

N. Gupta, J. Benhamida, V. Bhargava, D. Goodman, E. Kain, I. Kerman, N. Nguyen, N. Ollikainen, J. Rodriguez, J. Wang, et al. (2008)
Genome Res. 18, 1133-1142
 |  Abstract »  |  Full Text »  |  PDF »

Mining microbial genomes for new natural products and biosynthetic pathways.

G. L. Challis (2008)
Microbiology 154, 1555-1569
 |  Abstract »  |  Full Text »  |  PDF »

Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter.

S. R. Starkenburg, F. W. Larimer, L. Y. Stein, M. G. Klotz, P. S. G. Chain, L. A. Sayavedra-Soto, A. T. Poret-Peterson, M. E. Gentry, D. J. Arp, B. Ward, et al. (2008)
Appl. Envir. Microbiol. 74, 2852-2863
 |  Abstract »  |  Full Text »  |  PDF »

De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer.

D. Hernandez, P. Francois, L. Farinelli, M. Osteras, and J. Schrenzel (2008)
Genome Res. 18, 802-809
 |  Abstract »  |  Full Text »  |  PDF »

Molecular Genetic Basis of Ribotyping.

V. Bouchet, H. Huot, and R. Goldstein (2008)
Clin. Microbiol. Rev. 21, 262-273
 |  Abstract »  |  Full Text »  |  PDF »

The Periplasmic Disulfide Oxidoreductase DsbA Contributes to Haemophilus influenzae Pathogenesis.

C. V. Rosadini, S. M. S. Wong, and B. J. Akerley (2008)
Infect. Immun. 76, 1498-1508
 |  Abstract »  |  Full Text »  |  PDF »

Proteogenomics: needs and roles to be filled by proteomics in genome annotation.

C. Ansong, S. O. Purvine, J. N. Adkins, M. S. Lipton, and R. D. Smith (2008)
Brief Funct Genomic Proteomic
 |  Abstract »  |  Full Text »  |  PDF »

Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems.

P. N. Bertin, C. Medigue, and P. Normand (2008)
Microbiology 154, 347-359
 |  Abstract »  |  Full Text »  |  PDF »

Relationships of Nontypeable Haemophilus influenzae Strains to Hemolytic and Nonhemolytic Haemophilus haemolyticus Strains.

K. W. McCrea, J. Xie, N. LaCross, M. Patel, D. Mukundan, T. F. Murphy, C. F. Marrs, and J. R. Gilsdorf (2008)
J. Clin. Microbiol. 46, 406-416
 |  Abstract »  |  Full Text »  |  PDF »

RNA secondary structure regulates the translation of sxy and competence development in Haemophilus influenzae.

A. D.S. Cameron, M. Volar, L. A. Bannister, and R. J. Redfield (2008)
Nucleic Acids Res. 36, 10-20
 |  Abstract »  |  Full Text »  |  PDF »

MANTIS: a phylogenetic framework for multi-species genome comparisons.

A. C. Tzika, R. Helaers, Y. Van de Peer, and M. C. Milinkovitch (2008)
Bioinformatics 24, 151-157
 |  Abstract »  |  Full Text »  |  PDF »

GenoList: an integrated environment for comparative analysis of microbial genomes.

P. Lechat, L. Hummel, S. Rousseau, and I. Moszer (2008)
Nucleic Acids Res. 36, D469-D474
 |  Abstract »  |  Full Text »  |  PDF »

KEGG for linking genomes to life and the environment.

M. Kanehisa, M. Araki, S. Goto, M. Hattori, M. Hirakawa, M. Itoh, T. Katayama, S. Kawashima, S. Okuda, T. Tokimatsu, et al. (2008)
Nucleic Acids Res. 36, D480-D484
 |  Abstract »  |  Full Text »  |  PDF »

Translational Bioinformatics: At the Interface of Genomics and Quantitative Genetics.

W. D. Beavis, F. D. Schilkey, and S. M. Baxter (2007)
Crop Sci. 47, S-32-S-43
 |  Abstract »  |  Full Text »  |  PDF »

Structural analyses of a hypothetical minimal metabolism.

T. Gabaldon, J. Pereto, F. Montero, R. Gil, A. Latorre, and A. Moya (2007)
Phil Trans R Soc B 362, 1751-1762
 |  Abstract »  |  Full Text »  |  PDF »

Capsule Gene Analysis of Invasive Haemophilus influenzae: Accuracy of Serotyping and Prevalence of IS1016 among Nontypeable Isolates.

S. W. Satola, J. T. Collins, R. Napier, and M. M. Farley (2007)
J. Clin. Microbiol. 45, 3230-3238
 |  Abstract »  |  Full Text »  |  PDF »

DNA sequencing: bench to bedside and beyond.

C. A. Hutchison III (2007)
Nucleic Acids Res. 35, 6227-6237
 |  Abstract »  |  Full Text »  |  PDF »

Glutathione-Dependent Alcohol Dehydrogenase AdhC Is Required for Defense against Nitrosative Stress in Haemophilus influenzae.

S. P. Kidd, D. Jiang, M. P. Jennings, and A. G. McEwan (2007)
Infect. Immun. 75, 4506-4513
 |  Abstract »  |  Full Text »  |  PDF »

Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression.

K. L. Fox, S. J. Dowideit, A. L. Erwin, Y. N. Srikhanta, A. L. Smith, and M. P. Jennings (2007)
Nucleic Acids Res.
 |  Abstract »  |  Full Text »  |  PDF »

Multiple Consecutive Lavage Samplings Reveal Greater Burden of Disease and Provide Direct Access to the Nontypeable Haemophilus influenzae Biofilm in Experimental Otitis Media.

M. Leroy, H. Cabral, M. Figueira, V. Bouchet, H. Huot, S. Ram, S. I. Pelton, and R. Goldstein (2007)
Infect. Immun. 75, 4158-4172
 |  Abstract »  |  Full Text »  |  PDF »

Chloramphenicol Is a Substrate for a Novel Nitroreductase Pathway in Haemophilus influenzae.

A. L. Smith, A. L. Erwin, T. Kline, W. C. T. Unrath, K. Nelson, A. Weber, and W. N. Howald (2007)
Antimicrob. Agents Chemother. 51, 2820-2829
 |  Abstract »  |  Full Text »  |  PDF »

Deep-sea vent {varepsilon}-proteobacterial genomes provide insights into emergence of pathogens.

S. Nakagawa, Y. Takaki, S. Shimamura, A.-L. Reysenbach, K. Takai, and K. Horikoshi (2007)
PNAS 104, 12146-12150
 |  Abstract »  |  Full Text »  |  PDF »

Histidine Auxotrophy in Commensal and Disease-Causing Nontypeable Haemophilus influenzae.

P. C. Juliao, C. F. Marrs, J. Xie, and J. R. Gilsdorf (2007)
J. Bacteriol. 189, 4994-5001
 |  Abstract »  |  Full Text »  |  PDF »

VapC-1 of Nontypeable Haemophilus influenzae Is a Ribonuclease.

D. A. Daines, M. H. Wu, and S. Y. Yuan (2007)
J. Bacteriol. 189, 5041-5048
 |  Abstract »  |  Full Text »  |  PDF »

Serial Analysis of rRNA Genes and the Unexpected Dominance of Rare Members of Microbial Communities.

M. N. Ashby, J. Rine, E. F. Mongodin, K. E. Nelson, and D. Dimster-Denk (2007)
Appl. Envir. Microbiol. 73, 4532-4542
 |  Abstract »  |  Full Text »  |  PDF »

Ampicillin-Resistant Non-{beta}-Lactamase-Producing Haemophilus influenzae in Spain: Recent Emergence of Clonal Isolates with Increased Resistance to Cefotaxime and Cefixime.

S. Garcia-Cobos, J. Campos, E. Lazaro, F. Roman, E. Cercenado, C. Garcia-Rey, M. Perez-Vazquez, J. Oteo, and F. de Abajo (2007)
Antimicrob. Agents Chemother. 51, 2564-2573
 |  Abstract »  |  Full Text »  |  PDF »

What is a gene, post-ENCODE? History and updated definition.

M. B. Gerstein, C. Bruce, J. S. Rozowsky, D. Zheng, J. Du, J. O. Korbel, O. Emanuelsson, Z. D. Zhang, S. Weissman, and M. Snyder (2007)
Genome Res. 17, 669-681
 |  Abstract »  |  Full Text »  |  PDF »

Diversity of antibiotic resistance integrative and conjugative elements among haemophili.

I. D. Dimopoulou, S. I. Kartali, R. M. Harding, T. E. A. Peto, and D. W. Crook (2007)
J. Med. Microbiol. 56, 838-846
 |  Abstract »  |  Full Text »  |  PDF »

Genome of Methylobacillus flagellatus, Molecular Basis for Obligate Methylotrophy, and Polyphyletic Origin of Methylotrophy.

L. Chistoserdova, A. Lapidus, C. Han, L. Goodwin, L. Saunders, T. Brettin, R. Tapia, P. Gilna, S. Lucas, P. M. Richardson, et al. (2007)
J. Bacteriol. 189, 4020-4027
 |  Abstract »  |  Full Text »  |  PDF »

Bacterial Transcytosis across Conjunctival M Cells.

C. K. Petris, M. Golomb, and T. E. Phillips (2007)
Invest. Ophthalmol. Vis. Sci. 48, 2172-2177
 |  Abstract »  |  Full Text »  |  PDF »

Advanced sequencing technologies and their wider impact in microbiology.

N. Hall (2007)
J. Exp. Biol. 210, 1518-1525
 |  Abstract »  |  Full Text »  |  PDF »

Mosaic Structure of p1658/97, a 125-Kilobase Plasmid Harboring an Active Amplicon with the Extended-Spectrum {beta}-Lactamase Gene blaSHV-5.

M. Zienkiewicz, I. Kern-Zdanowicz, M. Golebiewski, J. Zylinska, P. Mieczkowski, M. Gniadkowski, J. Bardowski, and P. Ceglowski (2007)
Antimicrob. Agents Chemother. 51, 1164-1171
 |  Abstract »  |  Full Text »  |  PDF »

Precise Excision and Self-Integration of a Composite Transposon as a Model for Spontaneous Large-Scale Chromosome Inversion/Deletion of the Staphylococcus haemolyticus Clinical Strain JCSC1435.

S. Watanabe, T. Ito, Y. Morimoto, F. Takeuchi, and K. Hiramatsu (2007)
J. Bacteriol. 189, 2921-2925
 |  Abstract »  |  Full Text »  |  PDF »

Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir.

L. Feng, W. Wang, J. Cheng, Y. Ren, G. Zhao, C. Gao, Y. Tang, X. Liu, W. Han, X. Peng, et al. (2007)
PNAS 104, 5602-5607
 |  Abstract »  |  Full Text »  |  PDF »

DNA Sequencing: Strategies for Soil Microbiology.

M. D. Zwolinski (2007)
Soil Sci. Soc. Am. J. 71, 592-600
 |  Abstract »  |  Full Text »  |  PDF »

Complete Genome Sequence of Haemophilus somnus (Histophilus somni) Strain 129Pt and Comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd.

J. F. Challacombe, A. J. Duncan, T. S. Brettin, D. Bruce, O. Chertkov, J. C. Detter, C. S. Han, M. Misra, P. Richardson, R. Tapia, et al. (2007)
J. Bacteriol. 189, 1890-1898
 |  Abstract »  |  Full Text »  |  PDF »

Reduced Susceptibility of Haemophilus influenzae to the Peptide Deformylase Inhibitor LBM415 Can Result from Target Protein Overexpression Due to Amplified Chromosomal def Gene Copy Number.

C. R. Dean, S. Narayan, J. Richards, D. M. Daigle, S. Esterow, J. A. Leeds, H. Kamp, X. Puyang, B. Wiedmann, D. Mueller, et al. (2007)
Antimicrob. Agents Chemother. 51, 1004-1010
 |  Abstract »  |  Full Text »  |  PDF »

Assembling millions of short DNA sequences using SSAKE.

R. L. Warren, G. G. Sutton, S. J. M. Jones, and R. A. Holt (2007)
Bioinformatics 23, 500-501
 |  Abstract »  |  Full Text »  |  PDF »

Novel Type IV Secretion System Involved in Propagation of Genomic Islands.

M. Juhas, D. W. Crook, I. D. Dimopoulou, G. Lunter, R. M. Harding, D. J. P. Ferguson, and D. W. Hood (2007)
J. Bacteriol. 189, 761-771
 |  Abstract »  |  Full Text »  |  PDF »

An Inward-Facing Conformation of a Putative Metal-Chelate-Type ABC Transporter.

H. W. Pinkett, A. T. Lee, P. Lum, K. P. Locher, and D. C. Rees (2007)
Science 315, 373-377
 |  Abstract »  |  Full Text »  |  PDF »

Identification of the Functional Initiation Codons of a Phase-Variable Gene of Haemophilus influenzae, lic2A, with the Potential for Differential Expression.

K. Dixon, C. D. Bayliss, K. Makepeace, E. R. Moxon, and D. W. Hood (2007)
J. Bacteriol. 189, 511-521
 |  Abstract »  |  Full Text »  |  PDF »

The haem-haemopexin utilization gene cluster (hxuCBA) as a virulence factor of Haemophilus influenzae.

D. J. Morton, T. W. Seale, L. L. Madore, T. M. VanWagoner, P. W. Whitby, and T. L. Stull (2007)
Microbiology 153, 215-224
 |  Abstract »  |  Full Text »  |  PDF »

Identification of Genes Involved in the Expression of Atypical Lipooligosaccharide Structures from a Second Class of Haemophilus ducreyi.

D. M. B. Post, R. S. Munson Jr., B. Baker, H. Zhong, J. A. Bozue, and B. W. Gibson (2007)
Infect. Immun. 75, 113-121
 |  Abstract »  |  Full Text »  |  PDF »

Identification of New Genetic Regions More Prevalent in Nontypeable Haemophilus influenzae Otitis Media Strains than in Throat Strains.

J. Xie, P. C. Juliao, J. R. Gilsdorf, D. Ghosh, M. Patel, and C. F. Marrs (2006)
J. Clin. Microbiol. 44, 4316-4325
 |  Abstract »  |  Full Text »  |  PDF »

A Conserved Tetranucleotide Repeat Is Necessary for Wild-Type Expression of the Moraxella catarrhalis UspA2 Protein.

A. S. Attia and E. J. Hansen (2006)
J. Bacteriol. 188, 7840-7852
 |  Abstract »  |  Full Text »  |  PDF »

Role of lgtC in Resistance of Nontypeable Haemophilus influenzae Strain R2866 to Human Serum.

A. L. Erwin, S. Allen, D. K. Ho, P. J. Bonthius, J. Jarisch, K. L. Nelson, D. L. Tsao, W. C. T. Unrath, M. E. Watson Jr., B. W. Gibson, et al. (2006)
Infect. Immun. 74, 6226-6235
 |  Abstract »  |  Full Text »  |  PDF »

Presence of Copper- and Zinc-Containing Superoxide Dismutase in Commensal Haemophilus haemolyticus Isolates Can Be Used as a Marker To Discriminate Them from Nontypeable H. influenzae Isolates.

W. W. M. Fung, C. A. O'Dwyer, S. Sinha, A. L. Brauer, T. F. Murphy, J. S. Kroll, and P. R. Langford (2006)
J. Clin. Microbiol. 44, 4222-4226
 |  Abstract »  |  Full Text »  |  PDF »

Specific Amino Acids of the Glycosyltransferase LpsA Direct the Addition of Glucose or Galactose to the Terminal Inner Core Heptose of Haemophilus influenzae Lipopolysaccharide via Alternative Linkages.

M. E. Deadman, S. L. Lundstrom, E. K. H. Schweda, E. R. Moxon, and D. W. Hood (2006)
J. Biol. Chem. 281, 29455-29467
 |  Abstract »  |  Full Text »  |  PDF »

Engineered vaginal lactobacillus strain for mucosal delivery of the human immunodeficiency virus inhibitor cyanovirin-N..

X. Liu, L. A. Lagenaur, D. A. Simpson, K. P. Essenmacher, C. L. Frazier-Parker, Y. Liu, D. Tsai, S. S. Rao, D. H. Hamer, T. P. Parks, et al. (2006)
Antimicrob. Agents Chemother. 50, 3250-3259
 |  Abstract »  |  Full Text »  |  PDF »

Characterization of igaB, a Second Immunoglobulin A1 Protease Gene in Nontypeable Haemophilus influenzae..

M. M. Fernaays, A. J. Lesse, X. Cai, and T. F. Murphy (2006)
Infect. Immun. 74, 5860-5870
 |  Abstract »  |  Full Text »  |  PDF »

NAD+ utilization in pasteurellaceae: simplification of a complex pathway..

G. Gerlach and J. Reidl (2006)
J. Bacteriol. 188, 6719-6727
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Complete Genome Sequence of the Marine, Chemolithoautotrophic, Ammonia-Oxidizing Bacterium Nitrosococcus oceani ATCC 19707.

M. G. Klotz, D. J. Arp, P. S. G. Chain, A. F. El-Sheikh, L. J. Hauser, N. G. Hommes, F. W. Larimer, S. A. Malfatti, J. M. Norton, A. T. Poret-Peterson, et al. (2006)
Appl. Envir. Microbiol. 72, 6299-6315
 |  Abstract »  |  Full Text »  |  PDF »

Prediction of whole-genome DNA-DNA similarity, determination of G+C content and phylogenetic analysis within the family Pasteurellaceae by multilocus sequence analysis (MLSA)..

P. Kuhnert and B. M. Korczak (2006)
Microbiology 152, 2537-2548
 |  Abstract »  |  Full Text »  |  PDF »

Molecular Evolution of {beta}-Lactam-Resistant Haemophilus influenzae: 9-Year Surveillance of Penicillin-Binding Protein 3 Mutations in Isolates from Japan..

Y. Sanbongi, T. Suzuki, Y. Osaki, N. Senju, T. Ida, and K. Ubukata (2006)
Antimicrob. Agents Chemother. 50, 2487-2492
 |  Abstract »  |  Full Text »  |  PDF »

Differential Genome Contents of Nontypeable Haemophilus influenzae Strains from Adults with Chronic Obstructive Pulmonary Disease..

M. M. Fernaays, A. J. Lesse, S. Sethi, X. Cai, and T. F. Murphy (2006)
Infect. Immun. 74, 3366-3374
 |  Abstract »  |  Full Text »  |  PDF »

Heterogeneity in Tandem Octanucleotides within Haemophilus influenzae Lipopolysaccharide Biosynthetic Gene losA Affects Serum Resistance..

A. L. Erwin, P. J. Bonthuis, J. L. Geelhood, K. L. Nelson, K. W. McCrea, J. R. Gilsdorf, and A. L. Smith (2006)
Infect. Immun. 74, 3408-3414
 |  Abstract »  |  Full Text »  |  PDF »

The Haemophilus influenzae Type b hcsA and hcsB Gene Products Facilitate Transport of Capsular Polysaccharide across the Outer Membrane and Are Essential for Virulence.

S. Sukupolvi-Petty, S. Grass, and J. W. StGeme III (2006)
J. Bacteriol. 188, 3870-3877
 |  Abstract »  |  Full Text »  |  PDF »

Comparative Genomics of NAD Biosynthesis in Cyanobacteria..

S. Y. Gerdes, O. V. Kurnasov, K. Shatalin, B. Polanuyer, R. Sloutsky, V. Vonstein, R. Overbeek, and A. L. Osterman (2006)
J. Bacteriol. 188, 3012-3023
 |  Abstract »  |  Full Text »  |  PDF »

Microbial Phylogeny and Evolution: Concepts and Controversies.

J. O. Andersson (2006)
Syst Biol 55, 359-361
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Complete Genome Sequence of the Dehalorespiring Bacterium Desulfitobacterium hafniense Y51 and Comparison with Dehalococcoides ethenogenes 195.

H. Nonaka, G. Keresztes, Y. Shinoda, Y. Ikenaga, M. Abe, K. Naito, K. Inatomi, K. Furukawa, M. Inui, and H. Yukawa (2006)
J. Bacteriol. 188, 2262-2274
 |  Abstract »  |  Full Text »  |  PDF »

Role of the tryptophan residue in the vicinity of the catalytic center of exonuclease III family AP endonucleases: AP site recognition mechanism.

K. Kaneda, J. Sekiguchi, and T. Shida (2006)
Nucleic Acids Res. 34, 1552-1563
 |  Abstract »  |  Full Text »  |  PDF »

Genome Sequence of the Chemolithoautotrophic Nitrite-Oxidizing Bacterium Nitrobacter winogradskyi Nb-255..

S. R. Starkenburg, P. S. G. Chain, L. A. Sayavedra-Soto, L. Hauser, M. L. Land, F. W. Larimer, S. A. Malfatti, M. G. Klotz, P. J. Bottomley, D. J. Arp, et al. (2006)
Appl. Envir. Microbiol. 72, 2050-2063
 |  Abstract »  |  Full Text »  |  PDF »

Pyrroloquinoline Quinone-Dependent Dehydrogenases from Ketogulonicigenium vulgare Catalyze the Direct Conversion of L-Sorbosone to L-Ascorbic Acid.

T. Miyazaki, T. Sugisawa, and T. Hoshino (2006)
Appl. Envir. Microbiol. 72, 1487-1495
 |  Abstract »  |  Full Text »  |  PDF »

Genome Plasticity and ori-ter Rebalancing in Salmonella typhi.

G.-R. Liu, W.-Q. Liu, R. N. Johnston, K. E. Sanderson, S.-X. Li, and S.-L. Liu (2006)
Mol. Biol. Evol. 23, 365-371
 |  Abstract »  |  Full Text »  |  PDF »

Putative ABC Transporter Responsible for Acetic Acid Resistance in Acetobacter aceti.

S. Nakano, M. Fukaya, and S. Horinouchi (2006)
Appl. Envir. Microbiol. 72, 497-505
 |  Abstract »  |  Full Text »  |  PDF »

Exploration and Grading of Possible Genes from 183 Bacterial Strains by a Common Protocol to Identification of New Genes: Gene Trek in Prokaryote Space (GTPS).

T. Kosuge, T. Abe, T. Okido, N. Tanaka, M. Hirahata, Y. Maruyama, J. Mashima, A. Tomiki, M. Kurokawa, R. Himeno, et al. (2006)
DNA Res 13, 245-254
 |  Abstract »  |  Full Text »  |  PDF »

Megx.net--database resources for marine ecological genomics.

T. Lombardot, R. Kottmann, H. Pfeffer, M. Richter, H. Teeling, C. Quast, and F. O. Glockner (2006)
Nucleic Acids Res. 34, D390-D393
 |  Abstract »  |  Full Text »  |  PDF »

Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase.

O. Levy, J. L. Ptacin, P. J. Pease, J. Gore, M. B. Eisen, C. Bustamante, and N. R. Cozzarelli (2005)
PNAS 102, 17618-17623
 |  Abstract »  |  Full Text »  |  PDF »

Current trends in publicly available genetic databases.

M. G. Tyshenko and W. Leiss (2005)
Health Informatics Journal 11, 295-308
 |  Abstract »  |  PDF »

Insights on biology and evolution from microbial genome sequencing.

C. M. Fraser-Liggett (2005)
Genome Res. 15, 1603-1610
 |  Abstract »  |  Full Text »  |  PDF »

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