Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 30 September 1994:
Vol. 265. no. 5181, pp. 2082 - 2085
DOI: 10.1126/science.8091230

Articles

Science, Vol 265, Issue 5181, 2082-2085
Copyright © 1994 by American Association for the Advancement of Science


articles

Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease

AJ Bardwell, L Bardwell, AE Tomkinson, and EC Friedberg

Laboratory of Molecular Pathology, University of Texas Southwestern Medical Center at Dallas 75235.

The RAD1 and RAD10 genes of Saccharomyces cerevisiae are required for both nucleotide excision repair and certain mitotic recombination events. Here, model recombination and repair intermediates were used to show that Rad1-Rad10-mediated cleavage occurs at duplex-single-strand junctions. Moreover, cleavage occurs only on the strand containing the 3' single-stranded tail. Thus, both biochemical and genetic evidence indicate a role for the Rad1-Rad10 complex in the cleavage of specific recombination intermediates. Furthermore, these data suggest that Rad1-Rad10 endonuclease incises DNA 5' to damaged bases during nucleotide excision repair.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Mms19 protein functions in nucleotide excision repair by sustaining an adequate cellular concentration of the TFIIH component Rad3.
H. Kou, Y. Zhou, R. M. C. Gorospe, and Z. Wang (2008)
PNAS 105, 15714-15719
   Abstract »    Full Text »    PDF »
Mutants Defective in Rad1-Rad10-Slx4 Exhibit a Unique Pattern of Viability During Mating-Type Switching in Saccharomyces cerevisiae.
A. M. Lyndaker, T. Goldfarb, and E. Alani (2008)
Genetics 179, 1807-1821
   Abstract »    Full Text »    PDF »
Role of Dot1 in the Response to Alkylating DNA Damage in Saccharomyces cerevisiae: Regulation of DNA Damage Tolerance by the Error-Prone Polymerases Pol{zeta}/Rev1.
F. Conde and P. A. San-Segundo (2008)
Genetics 179, 1197-1210
   Abstract »    Full Text »    PDF »
Heteroduplex DNA in Meiotic Recombination in Drosophila mei-9 Mutants.
S. J. Radford, S. McMahan, H. L. Blanton, and J. Sekelsky (2007)
Genetics 176, 63-72
   Abstract »    Full Text »    PDF »
The Effects of Mismatch Repair and RAD1 Genes on Interchromosomal Crossover Recombination in Saccharomyces cerevisiae.
A. Nicholson, R. M. Fabbri, J. W. Reeves, and G. F. Crouse (2006)
Genetics 173, 647-659
   Abstract »    Full Text »    PDF »
Complex Formation with Damage Recognition Protein Rad14 Is Essential for Saccharomyces cerevisiae Rad1-Rad10 Nuclease To Perform Its Function in Nucleotide Excision Repair In Vivo.
S. N. Guzder, C. H. Sommers, L. Prakash, and S. Prakash (2006)
Mol. Cell. Biol. 26, 1135-1141
   Abstract »    Full Text »    PDF »
Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1.
O. V. Tsodikov, J. H. Enzlin, O. D. Scharer, and T. Ellenberger (2005)
PNAS 102, 11236-11241
   Abstract »    Full Text »    PDF »
Drosophila ERCC1 Is Required for a Subset of MEI-9-Dependent Meiotic Crossovers.
S. J. Radford, E. Goley, K. Baxter, S. McMahan, and J. Sekelsky (2005)
Genetics 170, 1737-1745
   Abstract »    Full Text »    PDF »
Distinct Roles for the Saccharomyces cerevisiae Mismatch Repair Proteins in Heteroduplex Rejection, Mismatch Repair and Nonhomologous Tail Removal.
T. Goldfarb and E. Alani (2005)
Genetics 169, 563-574
   Abstract »    Full Text »    PDF »
Requirement of yeast Rad1-Rad10 nuclease for the removal of 3'-blocked termini from DNA strand breaks induced by reactive oxygen species.
S. N. Guzder, C. Torres-Ramos, R. E. Johnson, L. Haracska, L. Prakash, and S. Prakash (2004)
Genes & Dev. 18, 2283-2291
   Abstract »    Full Text »    PDF »
DNA Repair Defects Channel Interstrand DNA Cross-links into Alternate Recombinational and Error-prone Repair Pathways.
W. A. Saffran, S. Ahmed, S. Bellevue, G. Pereira, T. Patrick, W. Sanchez, S. Thomas, M. Alberti, and J. E. Hearst (2004)
J. Biol. Chem. 279, 36462-36469
   Abstract »    Full Text »    PDF »
Deletion of the Nucleotide Excision Repair Gene Ercc1 Reduces Immunoglobulin Class Switching and Alters Mutations Near Switch Recombination Junctions.
C. E. Schrader, J. Vardo, E. Linehan, M. Z. Twarog, L. J. Niedernhofer, J. H.J. Hoeijmakers, and J. Stavnezer (2004)
J. Exp. Med. 200, 321-330
   Abstract »    Full Text »    PDF »
The Structure-Specific Endonuclease Ercc1-Xpf Is Required To Resolve DNA Interstrand Cross-Link-Induced Double-Strand Breaks.
L. J. Niedernhofer, H. Odijk, M. Budzowska, E. van Drunen, A. Maas, A. F. Theil, J. de Wit, N. G. J. Jaspers, H. B. Beverloo, J. H. J. Hoeijmakers, et al. (2004)
Mol. Cell. Biol. 24, 5776-5787
   Abstract »    Full Text »    PDF »
Mutational Analysis of the Drosophila DNA Repair and Recombination Gene mei-9.
O. Yildiz, H. Kearney, B. C. Kramer, and J. J. Sekelsky (2004)
Genetics 167, 263-273
   Abstract »    Full Text »    PDF »
Saccharomyces cerevisiae Rrm3p DNA Helicase Promotes Genome Integrity by Preventing Replication Fork Stalling: Viability of rrm3 Cells Requires the Intra-S-Phase Checkpoint and Fork Restart Activities.
J. Z. Torres, S. L. Schnakenberg, and V. A. Zakian (2004)
Mol. Cell. Biol. 24, 3198-3212
   Abstract »    Full Text »    PDF »
Physical and Functional Interaction between the XPF/ERCC1 Endonuclease and hRad52.
T. A. Motycka, T. Bessho, S. M. Post, P. Sung, and A. E. Tomkinson (2004)
J. Biol. Chem. 279, 13634-13639
   Abstract »    Full Text »    PDF »
A DNA-Damage-Induced Cell Cycle Checkpoint in Arabidopsis.
S. B. Preuss and A. B. Britt (2003)
Genetics 164, 323-334
   Abstract »    Full Text »    PDF »
Gene conversion tracts in Saccharomyces cerevisiae can be extremely short and highly directional.
S. Palmer, E. Schildkraut, R. Lazarin, J. Nguyen, and J. A. Nickoloff (2003)
Nucleic Acids Res. 31, 1164-1173
   Abstract »    Full Text »    PDF »
Role of RAD52 Epistasis Group Genes in Homologous Recombination and Double-Strand Break Repair.
L. S. Symington (2002)
Microbiol. Mol. Biol. Rev. 66, 630-670
   Abstract »    Full Text »    PDF »
Yeast Tdp1 and Rad1-Rad10 function as redundant pathways for repairing Top1 replicative damage.
J. R. Vance and T. E. Wilson (2002)
PNAS 99, 13669-13674
   Abstract »    Full Text »    PDF »
Multiple Pathways Promote Short-Sequence Recombination in Saccharomyces cerevisiae.
G. M. Manthey and A. M. Bailis (2002)
Mol. Cell. Biol. 22, 5347-5356
   Abstract »    Full Text »    PDF »
Formation of Large Palindromic DNA by Homologous Recombination of Short Inverted Repeat Sequences in Saccharomyces cerevisiae.
D. K. Butler, D. Gillespie, and B. Steele (2002)
Genetics 161, 1065-1075
   Abstract »    Full Text »    PDF »
A Role for MMS4 in the Processing of Recombination Intermediates During Meiosis in Saccharomyces cerevisiae.
T. de los Santos, J. Loidl, B. Larkin, and N. M. Hollingsworth (2001)
Genetics 159, 1511-1525
   Abstract »    Full Text »    PDF »
Functional overlap between Sgs1-Top3 and the Mms4-Mus81 endonuclease.
V. Kaliraman, J. R. Mullen, W. M. Fricke, S. A. Bastin-Shanower, and S. J. Brill (2001)
Genes & Dev. 15, 2730-2740
   Abstract »    Full Text »    PDF »
Meiotic Recombination Involving Heterozygous Large Insertions in Saccharomyces cerevisiae: Formation and Repair of Large, Unpaired DNA Loops.
H. M. Kearney, D. T. Kirkpatrick, J. L. Gerton, and T. D. Petes (2001)
Genetics 158, 1457-1476
   Abstract »    Full Text »    PDF »
Requirement for Three Novel Protein Complexes in the Absence of the Sgs1 DNA Helicase in Saccharomyces cerevisiae.
J. R. Mullen, V. Kaliraman, S. S. Ibrahim, and S. J. Brill (2001)
Genetics 157, 103-118
   Abstract »    Full Text »
Alteration of gene conversion tract length and associated crossing over during plasmid gap repair in nuclease-deficient strains of Saccharomyces cerevisiae.
L. S. Symington, L. E. Kang, and S. Moreau (2000)
Nucleic Acids Res. 28, 4649-4656
   Abstract »    Full Text »    PDF »
Yeast Mutants As a Model System for Identification of Determinants of Chemosensitivity.
P. Perego, G. S. Jimenez, L. Gatti, S. B. Howell, and F. Zunino (2000)
Pharmacol. Rev. 52, 477-492
   Abstract »    Full Text »    PDF »
Nucleotide Excision Repair and Cancer Predisposition : A Journey from Man to Yeast to Mice.
E. C. Friedberg (2000)
Am. J. Pathol. 157, 693-701
   Full Text »    PDF »
Evidence for the Involvement of Nucleotide Excision Repair in the Removal of Abasic Sites in Yeast.
C. A. Torres-Ramos, R. E. Johnson, L. Prakash, and S. Prakash (2000)
Mol. Cell. Biol. 20, 3522-3528
   Abstract »    Full Text »
CGG/CCG repeats exhibit orientation-dependent instability and orientation-independent fragility in Saccharomyces cerevisiae.
B. S. Balakumaran, C. H. Freudenreich, and V. A. Zakian (2000)
Hum. Mol. Genet. 9, 93-100
   Abstract »    Full Text »    PDF »
Radiosensitive and Mitotic Recombination Phenotypes of the Saccharomyces cerevisiae dun1 Mutant Defective in DNA Damage-Inducible Gene Expression.
M. Fasullo, J. Koudelik, P. AhChing, P. Giallanza, and C. Cera (1999)
Genetics 152, 909-919
   Abstract »    Full Text »
I-SceI Endonuclease, a New Tool for Studying DNA Double-Strand Break Repair Mechanisms in Drosophila.
Y. Bellaiche, V. Mogila, and N. Perrimon (1999)
Genetics 152, 1037-1044
   Abstract »    Full Text »
Multiple Pathways of Recombination Induced by Double-Strand Breaks in Saccharomyces cerevisiae.
F. Paques and J. E. Haber (1999)
Microbiol. Mol. Biol. Rev. 63, 349-404
   Abstract »    Full Text »    PDF »
Removal of One Nonhomologous DNA End During Gene Conversion by a RAD1- and MSH2-Independent Pathway.
M. P. Colaiácovo, F. Pâques, and J. E. Haber (1999)
Genetics 151, 1409-1423
   Abstract »    Full Text »
Conserved Residues of Human XPG Protein Important for Nuclease Activity and Function in Nucleotide Excision Repair.
A. Constantinou, D. Gunz, E. Evans, P. Lalle, P. A. Bates, R. D. Wood, and S. G. Clarkson (1999)
J. Biol. Chem. 274, 5637-5648
   Abstract »    Full Text »    PDF »
Role of Saccharomyces cerevisiae Chromatin Assembly Factor-I in Repair of Ultraviolet Radiation Damage in Vivo.
J. C. Game and P. D. Kaufman (1999)
Genetics 151, 485-497
   Abstract »    Full Text »
Affinity Purification and Partial Characterization of a Yeast Multiprotein Complex for Nucleotide Excision Repair Using Histidine-tagged Rad14 Protein.
K. Rodriguez, J. Talamantez, W. Huang, S. H. Reed, Z. Wang, L. Chen, W. J. Feaver, E. C. Friedberg, and A. E. Tomkinson (1998)
J. Biol. Chem. 273, 34180-34189
   Abstract »    Full Text »    PDF »
Physical interaction between components of DNA mismatch repair and nucleotide excision repair.
P. Bertrand, D. X. Tishkoff, N. Filosi, R. Dasgupta, and R. D. Kolodner (1998)
PNAS 95, 14278-14283
   Abstract »    Full Text »    PDF »
Yeast RNA Polymerase II Transcription In Vitro Is Inhibited in the Presence of Nucleotide Excision Repair: Complementation of Inhibition by Holo-TFIIH and Requirement for RAD26.
Z. You, W. J. Feaver, and E. C. Friedberg (1998)
Mol. Cell. Biol. 18, 2668-2676
   Abstract »    Full Text »
DNA Structural Elements Required for ERCC1-XPF Endonuclease Activity.
W. L. de Laat, E. Appeldoorn, N. G. J. Jaspers, and J. H. J. Hoeijmakers (1998)
J. Biol. Chem. 273, 7835-7842
   Abstract »    Full Text »    PDF »
Damage Control: The Pleiotropy of DNA Repair Genes in Drosophila melanogaster.
J. J. Sekelsky, K. C. Burtis, and R. S. Hawley (1998)
Genetics 148, 1587-1598
   Abstract »    Full Text »    PDF »
The Saccharomyces cerevisiae RAD9 Checkpoint Reduces the DNA Damage-Associated Stimulation of Directed Translocations.
M. Fasullo, T. Bennett, P. Ahching, and J. Koudelik (1998)
Mol. Cell. Biol. 18, 1190-1200
   Abstract »    Full Text »
DNA Mismatch Repair Catalyzed by Extracts of Mitotic, Postmitotic, and Senescent Drosophila Tissues and Involvement of mei-9 Gene Function for Full Activity.
A. Bhui-Kaur, M. F. Goodman, and J. Tower (1998)
Mol. Cell. Biol. 18, 1436-1443
   Abstract »    Full Text »
Role of Saccharomyces cerevisiae Msh2 and Msh3 repair proteins in double-strand break-induced recombination.
N. Sugawara, F. Paques, M. Colaiacovo, and J. E. Haber (1997)
PNAS 94, 9214-9219
   Abstract »    Full Text »    PDF »
Ku Selectively Transfers between DNA Molecules with Homologous Ends.
T. M. Bliss and D. P. Lane (1997)
J. Biol. Chem. 272, 5765-5773
   Abstract »    Full Text »    PDF »
Formation of DNA Repair Intermediates and Incision by the ATP-dependent UvrB-UvrC Endonuclease.
Y. Zou, R. Walker, H. Bassett, N. E. Geacintov, and B. Van Houten (1997)
J. Biol. Chem. 272, 4820-4827
   Abstract »    Full Text »    PDF »
Identification of Functional Domains within the RAD1·RAD10 Repair and Recombination Endonuclease of Saccharomyces cerevisiae.
K. Rodriguez, Z. Wang, E. C. Friedberg, and A. E. Tomkinson (1996)
J. Biol. Chem. 271, 20551-20558
   Abstract »    Full Text »    PDF »
A novel mechanism for telomere size control in Saccharomyces cerevisiae..
B Li and A J Lustig (1996)
Genes & Dev. 10, 1310-1326
   Abstract »    PDF »
Replication Protein A Confers Structure-specific Endonuclease Activities to the XPF-ERCC1 and XPG Subunits of Human DNA Repair Excision Nuclease.
T. Matsunaga, C.-H. Park, T. Bessho, D. Mu, and A. Sancar (1996)
J. Biol. Chem. 271, 11047-11050
   Abstract »    Full Text »    PDF »
Reconstitution of TFIIH and Requirement of Its DNA Helicase Subunits, Rad3 and Rad25, in the Incision Step of Nucleotide Excision Repair.
P. Sung, S. N. Guzder, L. Prakash, and S. Prakash (1996)
J. Biol. Chem. 271, 10821-10826
   Abstract »    Full Text »    PDF »
Analysis of Incision Sites Produced by Human Cell Extracts and Purified Proteins during Nucleotide Excision Repair of a 1,3-Intrastrand d(GpTpG)-Cisplatin Adduct.
J. G. Moggs, K. J. Yarema, J. M. Essigmann, and R. D. Wood (1996)
J. Biol. Chem. 271, 7177-7186
   Abstract »    Full Text »    PDF »
Structure-specific Nuclease Activity in Yeast Nucleotide Excision Repair Protein Rad2.
Y. Habraken, P. Sung, L. Prakash, and S. Prakash (1995)
J. Biol. Chem. 270, 30194-30198
   Abstract »    Full Text »    PDF »
Role of the Rad1 and Rad10 Proteins in Nucleotide Excision Repair and Recombination.
A. A. Davies, E. C. Friedberg, A. E. Tomkinson, R. D. Wood, and S. C. West (1995)
J. Biol. Chem. 270, 24638-24641
   Abstract »    Full Text »    PDF »
Purification and Characterization of the XPF-ERCC1 Complex of Human DNA Repair Excision Nuclease.
C.-H. Park, T. Bessho, T. Matsunaga, and A. Sancar (1995)
J. Biol. Chem. 270, 22657-22660
   Abstract »    Full Text »    PDF »
Human DNA Repair Excision Nuclease.
T. Matsunaga, D. Mu, C.-H. Park, J. T. Reardon, and A. Sancar (1995)
J. Biol. Chem. 270, 20862-20869
   Abstract »    Full Text »    PDF »
DNA Structural Elements Required for FEN-1 Binding.
J. J. Harrington and M. R. Lieber (1995)
J. Biol. Chem. 270, 4503-4508
   Abstract »    Full Text »    PDF »
The General Transcription-Repair Factor TFIIH Is Recruited to the Excision Repair Complex by the XPA Protein Independent of the TFIIE Transcription Factor.
C.-H. Park, D. Mu, J. T. Reardon, and A. Sancar (1995)
J. Biol. Chem. 270, 4896-4902
   Abstract »    Full Text »    PDF »
Mechanisms of DNA excision repair.
A Sancar (1994)
Science 266, 1954-1956
   PDF »
Repair of an Interstrand DNA Cross-link Initiated by ERCC1-XPF Repair/Recombination Nuclease.
I. Kuraoka, W. R. Kobertz, R. R. Ariza, M. Biggerstaff, J. M. Essigmann, and R. D. Wood (2000)
J. Biol. Chem. 275, 26632-26636
   Abstract »    Full Text »    PDF »
Transcription-induced Cleavage of Immunoglobulin Switch Regions by Nucleotide Excision Repair Nucleases in Vitro.
M. Tian and F. W. Alt (2000)
J. Biol. Chem. 275, 24163-24172
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)