Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
BioProduction 2008

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 3 December 1993:
Vol. 262. no. 5139, pp. 1561 - 1563
DOI: 10.1126/science.8248804

Articles

Science, Vol 262, Issue 5139, 1561-1563
Copyright © 1993 by American Association for the Advancement of Science


articles

Visualization of single molecules of RNA polymerase sliding along DNA

H Kabata, O Kurosawa, I Arai, M Washizu, SA Margarson, RE Glass, and N Shimamoto

DNA Research Center, National Institute of Genetics, Mishima, Japan.

Transcription requires that RNA polymerase binds to promoters buried in nonspecific sites on DNA. The search for promoters may be facilitated if the polymerase slides along the molecule of DNA. Single molecules of Escherichia coli RNA polymerase were visualized, and their movements on immobilized bacteriophage lambda and T7 DNAs were examined. Deviating from drifts by bulk flow, about 40 percent of the enzyme molecules moved along the extended DNA. The results provide direct evidence for sliding as a mechanism for relocation of the enzyme on DNA.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.
I. Bonnet, A. Biebricher, P.-L. Porte, C. Loverdo, O. Benichou, R. Voituriez, C. Escude, W. Wende, A. Pingoud, and P. Desbiolles (2008)
Nucleic Acids Res. 36, 4118-4127
   Abstract »    Full Text »    PDF »
Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules.
J. H. Kim and R. G. Larson (2007)
Nucleic Acids Res. 35, 3848-3858
   Abstract »    Full Text »    PDF »
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.
P. C. Blainey, A. M. van Oijen, A. Banerjee, G. L. Verdine, and X. S. Xie (2006)
PNAS 103, 5752-5757
   Abstract »    Full Text »    PDF »
Detection of single DNA molecules by multicolor quantum-dot end-labeling.
A. Crut, B. Geron-Landre, I. Bonnet, S. Bonneau, P. Desbiolles, and C. Escude (2005)
Nucleic Acids Res. 33, e98
   Abstract »    Full Text »    PDF »
From The Cover: Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.
B. Sclavi, E. Zaychikov, A. Rogozina, F. Walther, M. Buckle, and H. Heumann (2005)
PNAS 102, 4706-4711
   Abstract »    Full Text »    PDF »
RNA polymerase can track a DNA groove during promoter search.
K. Sakata-Sogawa and N. Shimamoto (2004)
PNAS 101, 14731-14735
   Abstract »    Full Text »    PDF »
Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes.
C. G. Kalodimos, N. Biris, A. M. J. J. Bonvin, M. M. Levandoski, M. Guennuegues, R. Boelens, and R. Kaptein (2004)
Science 305, 386-389
   Abstract »    Full Text »    PDF »
How do site-specific DNA-binding proteins find their targets?.
S. E. Halford and J. F. Marko (2004)
Nucleic Acids Res. 32, 3040-3052
   Abstract »    Full Text »    PDF »
Sequence-specific fluorescent labeling of double-stranded DNA observed at the single molecule level.
B. Geron-Landre, T. Roulon, P. Desbiolles, and C. Escude (2003)
Nucleic Acids Res. 31, e125
   Abstract »    Full Text »    PDF »
A Reaction-Diffusion Model for Interference in Meiotic Crossing Over.
Y. Fujitani, S. Mori, and I. Kobayashi (2002)
Genetics 161, 365-372
   Abstract »    Full Text »    PDF »
Observation by fluorescence microscopy of transcription on single combed DNA.
Z. Gueroui, C. Place, E. Freyssingeas, and B. Berge (2002)
PNAS 99, 6005-6010
   Abstract »    Full Text »    PDF »
Real-time observation of a single DNA digestion by {lambda} exonuclease under a fluorescence microscope field.
S.-i. Matsuura, J. Komatsu, K. Hirano, H. Yasuda, K. Takashima, S. Katsura, and A. Mizuno (2001)
Nucleic Acids Res. 29, e79
   Abstract »    Full Text »    PDF »
Single-Molecule Study of Transcriptional Pausing and Arrest by E. coli RNA Polymerase.
R. J. Davenport, G. J. Wuite, R. Landick, and C. Bustamante (2000)
Science 287, 2497-2500
   Abstract »    Full Text »
Facilitated Target Location on DNA by Individual Escherichia coli RNA Polymerase Molecules Observed with the Scanning Force Microscope Operating in Liquid.
C. Bustamante, M. Guthold, X. Zhu, and G. Yang (1999)
J. Biol. Chem. 274, 16665-16668
   Full Text »    PDF »
One-dimensional Diffusion of Proteins along DNA. ITS BIOLOGICAL AND CHEMICAL SIGNIFICANCE REVEALED BY SINGLE-MOLECULE MEASUREMENTS.
N. Shimamoto (1999)
J. Biol. Chem. 274, 15293-15296
   Full Text »    PDF »
Posttranscriptional Control of Gene Expression in Yeast.
J. E. G. McCarthy (1998)
Microbiol. Mol. Biol. Rev. 62, 1492-1553
   Abstract »    Full Text »    PDF »
Force and Velocity Measured for Single Molecules of RNA Polymerase.
M. D. Wang, M. J. Schnitzer, H. Yin, R. Landick, J. Gelles, and S. M. Block (1998)
Science 282, 902-907
   Abstract »    Full Text »
.
P. L. deHaseth, M. L. Zupancic, and M. T. Record Jr. (1998)
J. Bacteriol. 180, 3019-3025
   Full Text »
Comparison of the DNA Association Kinetics of the Lac Repressor Tetramer, Its Dimeric Mutant LacIadi, and the Native Dimeric Gal Repressor.
M. Hsieh and M. Brenowitz (1997)
J. Biol. Chem. 272, 22092-22096
   Abstract »    Full Text »    PDF »
Activation of RNA polymerase II by topologically linked DNA-tracking proteins.
M. Ouhammouch, M. H. Sayre, J. T. Kadonaga, and E. P. Geiduschek (1997)
PNAS 94, 6718-6723
   Abstract »    Full Text »    PDF »
Purification and Characterization of Intact and Truncated Forms of the Escherichia coli Biotin Carboxyl Carrier Subunit of Acetyl-CoA Carboxylase.
E. Nenortas and D. Beckett (1996)
J. Biol. Chem. 271, 7559-7567
   Abstract »    Full Text »    PDF »
Accurate Scanning of the BssHII Endonuclease in Search for Its DNA Cleavage Site.
B. Berkhout and J. van Wamel (1996)
J. Biol. Chem. 271, 1837-1840
   Abstract »    Full Text »    PDF »
Transcription Against an Applied Force.
H. Yin, M. D. Wang, K. Svoboda, R. Landick, S. M. Block, and J. Gelles (1995)
Science 270, 1653-1657
   Abstract »
Probing individual molecules with confocal fluorescence microscopy.
S Nie, D. Chiu, and R. Zare (1994)
Science 266, 1018-1021
   Abstract »    PDF »
Alignment and sensitive detection of DNA by a moving interface.
A Bensimon, A Simon, A Chiffaudel, V Croquette, F Heslot, and D Bensimon (1994)
Science 265, 2096-2098
   Abstract »    PDF »
Protein-DNA recognition: new perspectives and underlying themes.
P. von Hippel (1994)
Science 263, 769-770
   PDF »



ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)