Related Content
Search Google Scholar for:
|
|
Science 3 December 1993: Vol. 262. no. 5139, pp. 1561 - 1563 DOI: 10.1126/science.8248804
|
|
Articles
Science, Vol 262, Issue 5139, 1561-1563
Copyright © 1993 by American Association for the Advancement of Science
Visualization of single molecules of RNA polymerase sliding along DNA
H Kabata,
O Kurosawa,
I Arai,
M Washizu,
SA Margarson,
RE Glass,
and
N Shimamoto
DNA Research Center, National Institute of Genetics, Mishima, Japan.
Transcription requires that RNA polymerase binds to promoters buried in nonspecific sites on DNA. The search for promoters may be facilitated if the polymerase slides along the molecule of DNA. Single molecules of Escherichia coli RNA polymerase were visualized, and their movements on immobilized bacteriophage lambda and T7 DNAs were examined. Deviating from drifts by bulk flow, about 40 percent of the enzyme molecules moved along the extended DNA. The results provide direct evidence for sliding as a mechanism for relocation of the enzyme on DNA.
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Proliferating Cell Nuclear Antigen Uses Two Distinct Modes to Move along DNA.
- A. B. Kochaniak, S. Habuchi, J. J. Loparo, D. J. Chang, K. A. Cimprich, J. C. Walter, and A. M. van Oijen (2009)
J. Biol. Chem.
284, 17700-17710
| Abstract »
| Full Text »
| PDF »
- Growth-rate-dependent partitioning of RNA polymerases in bacteria.
- S. Klumpp and T. Hwa (2008)
PNAS
105, 20245-20250
| Abstract »
| Full Text »
| PDF »
- Slide into Action: Dynamic Shuttling of HIV Reverse Transcriptase on Nucleic Acid Substrates.
- S. Liu, E. A. Abbondanzieri, J. W. Rausch, S. F. J. L. Grice, and X. Zhuang (2008)
Science
322, 1092-1097
| Abstract »
| Full Text »
| PDF »
- Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.
- I. Bonnet, A. Biebricher, P.-L. Porte, C. Loverdo, O. Benichou, R. Voituriez, C. Escude, W. Wende, A. Pingoud, and P. Desbiolles (2008)
Nucleic Acids Res.
36, 4118-4127
| Abstract »
| Full Text »
| PDF »
- Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules.
- J. H. Kim and R. G. Larson (2007)
Nucleic Acids Res.
35, 3848-3858
| Abstract »
| Full Text »
| PDF »
- A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.
- P. C. Blainey, A. M. van Oijen, A. Banerjee, G. L. Verdine, and X. S. Xie (2006)
PNAS
103, 5752-5757
| Abstract »
| Full Text »
| PDF »
- Detection of single DNA molecules by multicolor quantum-dot end-labeling.
- A. Crut, B. Geron-Landre, I. Bonnet, S. Bonneau, P. Desbiolles, and C. Escude (2005)
Nucleic Acids Res.
33, e98
| Abstract »
| Full Text »
| PDF »
- From The Cover: Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.
- B. Sclavi, E. Zaychikov, A. Rogozina, F. Walther, M. Buckle, and H. Heumann (2005)
PNAS
102, 4706-4711
| Abstract »
| Full Text »
| PDF »
- RNA polymerase can track a DNA groove during promoter search.
- K. Sakata-Sogawa and N. Shimamoto (2004)
PNAS
101, 14731-14735
| Abstract »
| Full Text »
| PDF »
- Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes.
- C. G. Kalodimos, N. Biris, A. M. J. J. Bonvin, M. M. Levandoski, M. Guennuegues, R. Boelens, and R. Kaptein (2004)
Science
305, 386-389
| Abstract »
| Full Text »
| PDF »
- How do site-specific DNA-binding proteins find their targets?.
- S. E. Halford and J. F. Marko (2004)
Nucleic Acids Res.
32, 3040-3052
| Abstract »
| Full Text »
| PDF »
- Sequence-specific fluorescent labeling of double-stranded DNA observed at the single molecule level.
- B. Geron-Landre, T. Roulon, P. Desbiolles, and C. Escude (2003)
Nucleic Acids Res.
31, e125
| Abstract »
| Full Text »
| PDF »
- A Reaction-Diffusion Model for Interference in Meiotic Crossing Over.
- Y. Fujitani, S. Mori, and I. Kobayashi (2002)
Genetics
161, 365-372
| Abstract »
| Full Text »
| PDF »
- Observation by fluorescence microscopy of transcription on single combed DNA.
- Z. Gueroui, C. Place, E. Freyssingeas, and B. Berge (2002)
PNAS
99, 6005-6010
| Abstract »
| Full Text »
| PDF »
- Real-time observation of a single DNA digestion by {lambda} exonuclease under a fluorescence microscope field.
- S.-i. Matsuura, J. Komatsu, K. Hirano, H. Yasuda, K. Takashima, S. Katsura, and A. Mizuno (2001)
Nucleic Acids Res.
29, e79
| Abstract »
| Full Text »
| PDF »
- Single-Molecule Study of Transcriptional Pausing and Arrest by E. coli RNA Polymerase.
- R. J. Davenport, G. J. Wuite, R. Landick, and C. Bustamante (2000)
Science
287, 2497-2500
| Abstract »
| Full Text »
- Facilitated Target Location on DNA by Individual Escherichia coli RNA Polymerase Molecules Observed with the Scanning Force Microscope Operating in Liquid.
- C. Bustamante, M. Guthold, X. Zhu, and G. Yang (1999)
J. Biol. Chem.
274, 16665-16668
| Full Text »
| PDF »
- One-dimensional Diffusion of Proteins along DNA. ITS BIOLOGICAL AND CHEMICAL SIGNIFICANCE REVEALED BY SINGLE-MOLECULE MEASUREMENTS.
- N. Shimamoto (1999)
J. Biol. Chem.
274, 15293-15296
| Full Text »
| PDF »
- Posttranscriptional Control of Gene Expression in Yeast.
- J. E. G. McCarthy (1998)
Microbiol. Mol. Biol. Rev.
62, 1492-1553
| Abstract »
| Full Text »
| PDF »
- Force and Velocity Measured for Single Molecules of RNA Polymerase.
- M. D. Wang, M. J. Schnitzer, H. Yin, R. Landick, J. Gelles, and S. M. Block (1998)
Science
282, 902-907
| Abstract »
| Full Text »
- .
- P. L. deHaseth, M. L. Zupancic, and M. T. Record Jr. (1998)
J. Bacteriol.
180, 3019-3025
| Full Text »
- Comparison of the DNA Association Kinetics of the Lac Repressor Tetramer, Its Dimeric Mutant LacIadi, and the Native Dimeric Gal Repressor.
- M. Hsieh and M. Brenowitz (1997)
J. Biol. Chem.
272, 22092-22096
| Abstract »
| Full Text »
| PDF »
- Activation of RNA polymerase II by topologically linked DNA-tracking proteins.
- M. Ouhammouch, M. H. Sayre, J. T. Kadonaga, and E. P. Geiduschek (1997)
PNAS
94, 6718-6723
| Abstract »
| Full Text »
| PDF »
- Purification and Characterization of Intact and Truncated Forms of the Escherichia coli Biotin Carboxyl Carrier Subunit of Acetyl-CoA Carboxylase.
- E. Nenortas and D. Beckett (1996)
J. Biol. Chem.
271, 7559-7567
| Abstract »
| Full Text »
| PDF »
- Accurate Scanning of the BssHII Endonuclease in Search for Its DNA Cleavage Site.
- B. Berkhout and J. van Wamel (1996)
J. Biol. Chem.
271, 1837-1840
| Abstract »
| Full Text »
| PDF »
- Transcription Against an Applied Force.
- H. Yin, M. D. Wang, K. Svoboda, R. Landick, S. M. Block, and J. Gelles (1995)
Science
270, 1653-1657
| Abstract »
- Probing individual molecules with confocal fluorescence microscopy.
- S Nie, D. Chiu, and R. Zare (1994)
Science
266, 1018-1021
| Abstract »
| PDF »
- Alignment and sensitive detection of DNA by a moving interface.
- A Bensimon, A Simon, A Chiffaudel, V Croquette, F Heslot, and D Bensimon (1994)
Science
265, 2096-2098
| Abstract »
| PDF »
- Protein-DNA recognition: new perspectives and underlying themes.
- P. von Hippel (1994)
Science
263, 769-770
| PDF »
|
|