Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 6 August 1993:
Vol. 261. no. 5122, pp. 756 - 759
DOI: 10.1126/science.8342040

Articles

Science, Vol 261, Issue 5122, 756-759
Copyright © 1993 by American Association for the Advancement of Science


articles

Dialkylglycine decarboxylase structure: bifunctional active site and alkali metal sites

MD Toney, E Hohenester, SW Cowan, and JN Jansonius

Department of Structural Biology, University of Basel, Switzerland.

The structure of the bifunctional, pyridoxal phosphate-dependent enzyme dialkylglycine decarboxylase was determined to 2.1-angstrom resolution. Model building suggests that a single cleavage site catalyzes both decarboxylation and transamination by maximizing stereoelectronic advantages and providing electrostatic and general base catalysis. The enzyme contains two binding sites for alkali metal ions. One is located near the active site and accounts for the dependence of activity on potassium ions. The other is located at the carboxyl terminus of an alpha helix. These sites help show how proteins can specifically bind alkali metals and how these ions can exert functional effects.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Crystal Structure of human pyridoxal kinase: Structural basis of M+ and M2+ activation.
F. N. Musayev, M. L. di Salvo, T.-P. Ko, A. K. Gandhi, A. Goswami, V. Schirch, and M. K. Safo (2007)
Protein Sci. 16, 2184-2194
   Abstract »    Full Text »    PDF »
Role of na+ and k+ in enzyme function..
M. J. Page and E. Di Cera (2006)
Physiol Rev 86, 1049-1092
   Abstract »    Full Text »    PDF »
A Structural Perspective on Enzymes Activated by Monovalent Cations.
E. Di Cera (2006)
J. Biol. Chem. 281, 1305-1308
   Abstract »    Full Text »    PDF »
Pyruvate Kinase Revisited: THE ACTIVATING EFFECT OF K+.
J. Oria-Hernandez, N. Cabrera, R. Perez-Montfort, and L. Ramirez-Silva (2005)
J. Biol. Chem. 280, 37924-37929
   Abstract »    Full Text »    PDF »
Conversion of 5-aminolevulinate synthase into a more active enzyme by linking the two subunits: Spectroscopic and kinetic properties.
J. Zhang, A. V. Cheltsov, and G. C. Ferreira (2005)
Protein Sci. 14, 1190-1200
   Abstract »    Full Text »    PDF »
Biochemical Requirements for Inhibition of Connexin26-containing Channels by Natural and Synthetic Taurine Analogs.
L. Tao and A. L. Harris (2004)
J. Biol. Chem. 279, 38544-38554
   Abstract »    Full Text »    PDF »
Molecular Dissection of Na+ Binding to Thrombin.
A. O. Pineda, C. J. Carrell, L. A. Bush, S. Prasad, S. Caccia, Z.-W. Chen, F. S. Mathews, and E. Di Cera (2004)
J. Biol. Chem. 279, 31842-31853
   Abstract »    Full Text »    PDF »
Structures of {gamma}-Aminobutyric Acid (GABA) Aminotransferase, a Pyridoxal 5'-Phosphate, and [2Fe-2S] Cluster-containing Enzyme, Complexed with {gamma}-Ethynyl-GABA and with the Antiepilepsy Drug Vigabatrin.
P. Storici, D. De Biase, F. Bossa, S. Bruno, A. Mozzarelli, C. Peneff, R. B. Silverman, and T. Schirmer (2004)
J. Biol. Chem. 279, 363-373
   Abstract »    Full Text »    PDF »
Redesigning the monovalent cation specificity of an enzyme.
S. Prasad, K. J. Wright, D. Banerjee Roy, L. A. Bush, A. M. Cantwell, and E. Di Cera (2003)
PNAS 100, 13785-13790
   Abstract »    Full Text »    PDF »
Synthetic receptors as models for alkali metal cation-pi binding sites in proteins.
S. L. De Wall, E. S. Meadows, L. J. Barbour, and G. W. Gokel (2000)
PNAS 97, 6271-6276
   Abstract »    Full Text »    PDF »
Genes Specific for the Biosynthesis of Clavam Metabolites Antipodal to Clavulanic Acid Are Clustered with the Gene for Clavaminate Synthase 1 in Streptomyces clavuligerus.
R. H. Mosher, A. S. Paradkar, C. Anders, B. Barton, and S. E. Jensen (1999)
Antimicrob. Agents Chemother. 43, 1215-1224
   Abstract »    Full Text »
Rat Liver Serine Dehydratase. BACTERIAL EXPRESSION AND TWO FOLDING DOMAINS AS REVEALED BY LIMITED PROTEOLYSIS.
H. Ogawa, F. Takusagawa, K. Wakaki, H. Kishi, M. R. Eskandarian, M. Kobayashi, T. Date, N.-H. Huh, and H. C. Pitot (1999)
J. Biol. Chem. 274, 12855-12860
   Abstract »    Full Text »    PDF »
Characterization of Biosynthetic Enzymes for Ectoine as a Compatible Solute in a Moderately Halophilic Eubacterium, Halomonas elongata.
H. Ono, K. Sawada, N. Khunajakr, T. Tao, M. Yamamoto, M. Hiramoto, A. Shinmyo, M. Takano, and Y. Murooka (1999)
J. Bacteriol. 181, 91-99
   Abstract »    Full Text »
Plasticity of the Tryptophan Synthase Active Site Probed by 31P NMR Spectroscopy.
K. D. Schnackerz and A. Mozzarelli (1998)
J. Biol. Chem. 273, 33247-33253
   Abstract »    Full Text »    PDF »
Transporters for Cationic Amino Acids in Animal Cells: Discovery, Structure, and Function.
R. DEVES and C. A. R. BOYD (1998)
Physiol Rev 78, 487-545
   Abstract »    Full Text »    PDF »
Evidence That Ser775 in the alpha  Subunit of the Na,K-ATPase Is a Residue in the Cation Binding Pocket.
R. Blostein, A. Wilczynska, S. J. D. Karlish, J. M. Arguello, and J. B Lingrel (1997)
J. Biol. Chem. 272, 24987-24993
   Abstract »    Full Text »    PDF »
Crystal structure of glutamate-1-semialdehyde aminomutase: An alpha 2-dimeric vitamin B6-dependent enzyme with asymmetry in structure and active site reactivity.
M. Hennig, B. Grimm, R. Contestabile, R. A. John, and J. N. Jansonius (1997)
PNAS 94, 4866-4871
   Abstract »    Full Text »    PDF »
Cation Effects on Protein Conformation and Transport in the Na+/Glucose Cotransporter.
B. A. Hirayama, D. D.F. Loo, and E. M. Wright (1997)
J. Biol. Chem. 272, 2110-2115
   Abstract »    Full Text »    PDF »
Mutation of Amino Acid Residues in the Putative Transmembrane Segments of the Cardiac Sarcolemmal Na+-Ca2+ Exchanger.
D. A. Nicoll, L. V. Hryshko, S. Matsuoka, J. S. Frank, and K. D. Philipson (1996)
J. Biol. Chem. 271, 13385-13391
   Abstract »    Full Text »    PDF »
Photolabile Amiloride Derivatives as Cation Site Probes of the Na,K-ATPase.
G. C. R. Ellis-Davies, T. R. Kleyman, and J. H. Kaplan (1996)
J. Biol. Chem. 271, 10353-10358
   Abstract »    Full Text »    PDF »
Monovalent Cation Activation and Kinetic Mechanism of Inosine 5`-Monophosphate Dehydrogenase.
B. Xiang, J. C. Taylor, and G. D. Markham (1996)
J. Biol. Chem. 271, 1435-1440
   Abstract »    Full Text »    PDF »
Substitutions of Serine 775 in the alpha Subunit of the Na,K-ATPase Selectively Disrupt K[IMAGE] High Affinity Activation without Affecting Na[IMAGE] Interaction.
J. M. Argüello and J. B Lingrel (1995)
J. Biol. Chem. 270, 22764-22771
   Abstract »    Full Text »    PDF »
The Na[IMAGE] Binding Site of Thrombin.
E. Di Cera, E. R. Guinto, A. Vindigni, Q. D. Dang, Y. M. Ayala, M. Wuyi, and A. Tulinsky (1995)
J. Biol. Chem. 270, 22089-22092
   Abstract »    Full Text »    PDF »
Investigation of Monovalent Cation Activation of S-Adenosylmethionine Synthetase Using Mutagenesis and Uranyl Inhibition.
M. S. McQueney and G. D. Markham (1995)
J. Biol. Chem. 270, 18277-18284
   Abstract »    Full Text »    PDF »
Monovalent Cations Partially Repair a Conformational Defect in a Mutant Tryptophan Synthase [IMAGE][IMAGE][IMAGE][IMAGE] Complex ([IMAGE]-E109A).
S. B. Ruvinov, S. A. Ahmed, P. McPhie, and E. W. Miles (1995)
J. Biol. Chem. 270, 17333-17338
   Abstract »    Full Text »    PDF »
Genetic Evidence for Two Sequentially Occupied K[IMAGE] Binding Sites in the Kdp Transport ATPase.
E. T. Buurman, K.-T. Kim, and W. Epstein (1995)
J. Biol. Chem. 270, 6678-6685
   Abstract »    Full Text »    PDF »
How Potassium Affects the Activity of the Molecular Chaperone Hsc70.
M. C. O'Brien and D. B. McKay (1995)
J. Biol. Chem. 270, 2247-2250
   Abstract »    Full Text »    PDF »
How Potassium Affects the Activity of the Molecular Chaperone Hsc70.
S. M. Wilbanks and D. B. McKay (1995)
J. Biol. Chem. 270, 2251-2257
   Abstract »    Full Text »    PDF »
Changing the Ion Binding Specificity of the Escherichia coli H[IMAGE]-transporting ATP Synthase by Directed Mutagenesis of Subunit c.
Y. Zhang and R. H. Fillingame (1995)
J. Biol. Chem. 270, 87-93
   Abstract »    Full Text »    PDF »
Potassium selectivity in proteins: oxygen cage or pi in the face?.
C Miller (1993)
Science 261, 1692-1693
   PDF »
Roles of Active Site and Novel K+ Ion-binding Site Residues in Human Mitochondrial Branched-chain alpha -Ketoacid Decarboxylase/Dehydrogenase.
R. M. Wynn, R. Ho, J. L. Chuang, and D. T. Chuang (2001)
J. Biol. Chem. 276, 4168-4174
   Abstract »    Full Text »    PDF »



ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)