Science 30 October 1992: Vol. 258. no. 5083, pp. 818 - 821 DOI: 10.1126/science.1359641

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Articles

Rapid identification of homologous recombinants and determination of gene copy number with reference/query pyrosequencing (RQPS).

Z. Liu, A. C. Obenauf, M. R. Speicher, and R. Kopan (2009)
Genome Res. 19, 2081-2089
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Random DNA fragmentation allows detection of single-copy, single-exon alterations of copy number by oligonucleotide array CGH in clinical FFPE samples.

G. Hostetter, S. Y. Kim, S. Savage, G. C. Gooden, M. Barrett, J. Zhang, L. Alla, A. Watanabe, J. Einspahr, A. Prasad, et al. (2009)
Nucleic Acids Res.
 |  Abstract »  |  Full Text »  |  PDF »

Integrated study of copy number states and genotype calls using high-density SNP arrays.

W. Sun, F. A. Wright, Z. Tang, S. H. Nordgard, P. V. Loo, T. Yu, V. N. Kristensen, and C. M. Perou (2009)
Nucleic Acids Res. 37, 5365-5377
 |  Abstract »  |  Full Text »  |  PDF »

Inferring progression models for CGH data.

J. Liu, N. Bandyopadhyay, S. Ranka, M. Baudis, and T. Kahveci (2009)
Bioinformatics 25, 2208-2215
 |  Abstract »  |  Full Text »  |  PDF »

Genome Sequencing and Comparative Analysis of Klebsiella pneumoniae NTUH-K2044, a Strain Causing Liver Abscess and Meningitis.

K.-M. Wu, L.-H. Li, J.-J. Yan, N. Tsao, T.-L. Liao, H.-C. Tsai, C.-P. Fung, H.-J. Chen, Y.-M. Liu, J.-T. Wang, et al. (2009)
J. Bacteriol. 191, 4492-4501
 |  Abstract »  |  Full Text »  |  PDF »

Cytogenetic and cDNA Microarray Expression Analysis of MCF10 Human Breast Cancer Progression Cell Lines.

N. V. Marella, K. S. Malyavantham, J. Wang, S.-i. Matsui, P. Liang, and R. Berezney (2009)
Cancer Res. 69, 5946-5953
 |  Abstract »  |  Full Text »  |  PDF »

Microalterations of Inherently Unstable Genomic Regions in Rat Mammary Carcinomas as Revealed by Long Oligonucleotide Array-Based Comparative Genomic Hybridization.

T. Adamovic, D. McAllister, V. Guryev, X. Wang, J. W. Andrae, E. Cuppen, H. J. Jacob, and S. L. Sugg (2009)
Cancer Res. 69, 5159-5167
 |  Abstract »  |  Full Text »  |  PDF »

The analysis of inconsistencies between cytogenetic annotations and sequence mapping by defining the imprecision zones of cytogenetic banding.

K.-H. Yen, C.-L. Ho, and C. Lee (2009)
Bioinformatics 25, 845-852
 |  Abstract »  |  Full Text »  |  PDF »

Microarray-Based Genomic DNA Profiling Technologies in Clinical Molecular Diagnostics.

Y. Shen and B.-L. Wu (2009)
Clin. Chem. 55, 659-669
 |  Abstract »  |  Full Text »  |  PDF »

Cis-regulatory Mutations in the Caenorhabditis elegans Homeobox Gene Locus cog-1 Affect Neuronal Development.

M. M. O'Meara, H. Bigelow, S. Flibotte, J. F. Etchberger, D. G. Moerman, and O. Hobert (2009)
Genetics 181, 1679-1686
 |  Abstract »  |  Full Text »  |  PDF »

PanCGH: a genotype-calling algorithm for pangenome CGH data.

J. R. Bayjanov, M. Wels, M. Starrenburg, J. E. T. van Hylckama Vlieg, R. J. Siezen, and D. Molenaar (2009)
Bioinformatics 25, 309-314
 |  Abstract »  |  Full Text »  |  PDF »

Presence of 1q gain and absence of 7p gain are new predictors of local or metastatic relapse in localized resectable neuroblastoma.

A. Pezzolo, E. Rossi, S. Gimelli, F. Parodi, F. Negri, M. Conte, A. Pistorio, A. Sementa, V. Pistoia, O. Zuffardi, et al. (2009)
Neuro-oncol 11, 192-200
 |  Abstract »  |  Full Text »  |  PDF »

Use of comprehensive chromosomal screening for embryo assessment: microarrays and CGH.

D. Wells, S. Alfarawati, and E. Fragouli (2008)
Mol. Hum. Reprod. 14, 703-710
 |  Abstract »  |  Full Text »  |  PDF »

Immunohistochemical and Biogenetic Features of Diffuse-Type Tenosynovial Giant Cell Tumors: The Potential Roles of Cyclin A, P53, and Deletion of 15q in Sarcomatous Transformation.

H.-Y. Huang, R. B. West, C.-C. Tzeng, M. van de Rijn, J.-W. Wang, S.-C. Chou, W.-W. Huang, H.-L. Eng, C.-N. Lin, S.-C. Yu, et al. (2008)
Clin. Cancer Res. 14, 6023-6032
 |  Abstract »  |  Full Text »  |  PDF »

A fast Bayesian change point analysis for the segmentation of microarray data.

C. Erdman and J. W. Emerson (2008)
Bioinformatics 24, 2143-2148
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Overexpression of Separase induces aneuploidy and mammary tumorigenesis.

N. Zhang, G. Ge, R. Meyer, S. Sethi, D. Basu, S. Pradhan, Y.-J. Zhao, X.-N. Li, W.-W. Cai, A. K. El-Naggar, et al. (2008)
PNAS 105, 13033-13038
 |  Abstract »  |  Full Text »  |  PDF »

Advances in Chemical Carcinogenesis: A Historical Review and Prospective.

L. A. Loeb and C. C. Harris (2008)
Cancer Res. 68, 6863-6872
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Detection of genomic imbalances in microdissected Hodgkin and Reed-Sternberg cells of classical Hodgkin's lymphoma by array-based comparative genomic hybridization.

S. Hartmann, J. I. Martin-Subero, S. Gesk, J. Husken, M. Giefing, I. Nagel, J. Riemke, A. Chott, W. Klapper, M. Parrens, et al. (2008)
Haematologica 93, 1318-1326
 |  Abstract »  |  Full Text »  |  PDF »

Birth of a healthy boy after a double factor PGD in a couple carrying a genetic disease and at risk for aneuploidy: Case Report.

A. Obradors, E. Fernandez, M. Oliver-Bonet, M. Rius, A. de la Fuente, D. Wells, J. Benet, and J. Navarro (2008)
Hum. Reprod. 23, 1949-1956
 |  Abstract »  |  Full Text »  |  PDF »

Classification and feature selection algorithms for multi-class CGH data.

J. Liu, S. Ranka, and T. Kahveci (2008)
Bioinformatics 24, i86-i95
 |  Abstract »  |  Full Text »  |  PDF »

A robust framework for detecting structural variations in a genome.

S. Lee, E. Cheran, and M. Brudno (2008)
Bioinformatics 24, i59-i67
 |  Abstract »  |  Full Text »  |  PDF »

EGFR regulation by microRNA in lung cancer: correlation with clinical response and survival to gefitinib and EGFR expression in cell lines.

G. J. Weiss, L. T. Bemis, E. Nakajima, M. Sugita, D. K. Birks, W. A. Robinson, M. Varella-Garcia, P. A. Bunn Jr, J. Haney, B. A. Helfrich, et al. (2008)
Ann. Onc. 19, 1053-1059
 |  Abstract »  |  Full Text »  |  PDF »

Scanning the human genome at kilobase resolution.

J. Chen, Y. C. Kim, Y.-C. Jung, Z. Xuan, G. Dworkin, Y. Zhang, M. Q. Zhang, and S. M. Wang (2008)
Genome Res. 18, 751-762
 |  Abstract »  |  Full Text »  |  PDF »

Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data.

C. Klijn, H. Holstege, J. de Ridder, X. Liu, M. Reinders, J. Jonkers, and L. Wessels (2008)
Nucleic Acids Res. 36, e13
 |  Abstract »  |  Full Text »  |  PDF »

Sparse representation and Bayesian detection of genome copy number alterations from microarray data.

R. Pique-Regi, J. Monso-Varona, A. Ortega, R. C. Seeger, T. J. Triche, and S. Asgharzadeh (2008)
Bioinformatics 24, 309-318
 |  Abstract »  |  Full Text »  |  PDF »

Estrogen Receptor Status Could Modulate the Genomic Pattern in Familial and Sporadic Breast Cancer.

L. Melchor, E. Honrado, J. Huang, S. Alvarez, T. L. Naylor, M. J. Garcia, A. Osorio, D. Blesa, M. R. Stratton, B. L. Weber, et al. (2007)
Clin. Cancer Res. 13, 7305-7313
 |  Abstract »  |  Full Text »  |  PDF »

Human 8-Oxoguanine DNA Glycosylase Suppresses the Oxidative Stress Induced Apoptosis through a p53-Mediated Signaling Pathway in Human Fibroblasts.

C.-K. Youn, P. I. Song, M.-H. Kim, J. S. Kim, J.-W. Hyun, S.-J. Choi, S. P. Yoon, M. H. Chung, I.-Y. Chang, and H. J. You (2007)
Mol. Cancer Res. 5, 1083-1098
 |  Abstract »  |  Full Text »  |  PDF »

DNA copy number status is a powerful predictor of poor survival in endocrine pancreatic tumor patients.

Y M H Jonkers, S M H Claessen, A Perren, A M Schmitt, L J Hofland, W de Herder, R R de Krijger, A A J Verhofstad, A R Hermus, J A Kummer, et al. (2007)
Endocr. Relat. Cancer 14, 769-779
 |  Abstract »  |  Full Text »  |  PDF »

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

L. Conde, D. Montaner, J. Burguet-Castell, J. Tarraga, I. Medina, F. Al-Shahrour, and J. Dopazo (2007)
Nucleic Acids Res. 35, W81-W85
 |  Abstract »  |  Full Text »  |  PDF »

A hierarchical clustering method for estimating copy number variation.

B. Xing, C. M. T. Greenwood, and S. B. Bull (2007)
Biostat. 8, 632-653
 |  Abstract »  |  Full Text »  |  PDF »

Amplification Patterns of Three Genomic Regions Predict Distant Recurrence in Breast Carcinoma.

L. M. Davis, C. Harris, L. Tang, P. Doherty, P. Hraber, Y. Sakai, T. Bocklage, K. Doeden, B. Hall, J. Alsobrook, et al. (2007)
J. Mol. Diagn. 9, 327-336
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Autophagy suppresses tumor progression by limiting chromosomal instability.

R. Mathew, S. Kongara, B. Beaudoin, C. M. Karp, K. Bray, K. Degenhardt, G. Chen, S. Jin, and E. White (2007)
Genes & Dev. 21, 1367-1381
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Molecular analysis of deletions in human chromosome 3p21 and the role of resident cancer genes in disease.

D. Angeloni (2007)
Brief Funct Genomic Proteomic
 |  Abstract »  |  Full Text »  |  PDF »

Characterization of ABL1 expression in adult T-cell acute lymphoblastic leukemia by oligonucleotide array analysis.

S. Chiaretti, S. Tavolaro, E. M. Ghia, C. Ariola, C. Matteucci, L. Elia, R. Maggio, M. Messina, M. R. Ricciardi, A. Vitale, et al. (2007)
Haematologica 92, 619-626
 |  Abstract »  |  Full Text »  |  PDF »

MPP: a microarray-to-phylogeny pipeline for analysis of gene and marker content datasets.

R. Davey, G. Savva, J. Dicks, and I. N. Roberts (2007)
Bioinformatics 23, 1023-1025
 |  Abstract »  |  Full Text »  |  PDF »

Assessment of the Frequency of Allelic Imbalance in Human Tissue Using a Multiplex Polymerase Chain Reaction System.

C. M. Heaphy, W. C. Hines, K. S. Butler, C. M. Haaland, G. Heywood, E. G. Fischer, M. Bisoffi, and J. K. Griffith (2007)
J. Mol. Diagn. 9, 266-271
 |  Abstract »  |  Full Text »  |  PDF »

Malignant and benign ganglioglioma: A pathological and molecular study.

A. Pandita, A. Balasubramaniam, R. Perrin, P. Shannon, and A. Guha (2007)
Neuro-oncol 9, 124-134
 |  Abstract »  |  Full Text »  |  PDF »

Integrative Genomic Analysis of Small-Cell Lung Carcinoma Reveals Correlates of Sensitivity to Bcl-2 Antagonists and Uncovers Novel Chromosomal Gains.

E. T. Olejniczak, C. Van Sant, M. G. Anderson, G. Wang, S. K. Tahir, G. Sauter, R. Lesniewski, and D. Semizarov (2007)
Mol. Cancer Res. 5, 331-339
 |  Abstract »  |  Full Text »  |  PDF »

A faster circular binary segmentation algorithm for the analysis of array CGH data.

E. S. Venkatraman and A. B. Olshen (2007)
Bioinformatics 23, 657-663
 |  Abstract »  |  Full Text »  |  PDF »

Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization.

J. S. Maydan, S. Flibotte, M. L. Edgley, J. Lau, R. R. Selzer, T. A. Richmond, N. J. Pofahl, J. H. Thomas, and D. G. Moerman (2007)
Genome Res. 17, 337-347
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Markers improve clustering of CGH data.

J. Liu, S. Ranka, and T. Kahveci (2007)
Bioinformatics 23, 450-457
 |  Abstract »  |  Full Text »  |  PDF »

DNA Microarrays in Herbal Drug Research.

P. Chavan, K. Joshi, and B. Patwardhan (2006)
Evid. Based Complement. Altern. Med. 3, 447-457
 |  Abstract »  |  Full Text »  |  PDF »

Novel patterns of genome rearrangement and their association with survival in breast cancer.

J. Hicks, A. Krasnitz, B. Lakshmi, N. E. Navin, M. Riggs, E. Leibu, D. Esposito, J. Alexander, J. Troge, V. Grubor, et al. (2006)
Genome Res. 16, 1465-1479
 |  Abstract »  |  Full Text »  |  PDF »

Overexpression of Glycosylphosphatidylinositol (GPI) Transamidase Subunits Phosphatidylinositol Glycan Class T and/or GPI Anchor Attachment 1 Induces Tumorigenesis and Contributes to Invasion in Human Breast Cancer..

G. Wu, Z. Guo, A. Chatterjee, X. Huang, E. Rubin, F. Wu, E. Mambo, X. Chang, M. Osada, M. Sook Kim, et al. (2006)
Cancer Res. 66, 9829-9836
 |  Abstract »  |  Full Text »  |  PDF »

Genetic alterations associated with acquired temozolomide resistance in SNB-19, a human glioma cell line..

N. Auger, J. Thillet, K. Wanherdrick, A. Idbaih, M.-E. Legrier, B. Dutrillaux, M. Sanson, and M.-F. Poupon (2006)
Mol. Cancer Ther. 5, 2182-2192
 |  Abstract »  |  Full Text »  |  PDF »

Distance-based clustering of CGH data.

J. Liu, J. Mohammed, J. Carter, S. Ranka, T. Kahveci, and M. Baudis (2006)
Bioinformatics 22, 1971-1978
 |  Abstract »  |  Full Text »  |  PDF »

Genomic approaches to lung cancer..

R. K. Thomas, B. Weir, and M. Meyerson (2006)
Clin. Cancer Res. 12, 4384s-4391s
 |  Abstract »  |  Full Text »  |  PDF »

Mouse models of lung cancer..

A. Dutt and K.-K. Wong (2006)
Clin. Cancer Res. 12, 4396s-4402s
 |  Abstract »  |  Full Text »  |  PDF »

A pseudolikelihood approach for simultaneous analysis of array comparative genomic hybridizations.

D. A. Engler, G. Mohapatra, D. N. Louis, and R. A. Betensky (2006)
Biostat. 7, 399-421
 |  Abstract »  |  Full Text »  |  PDF »

Developmental model for the pathogenesis of testicular carcinoma in situ: genetic and environmental aspects.

E. Rajpert-De Meyts (2006)
Hum. Reprod. Update 12, 303-323
 |  Abstract »  |  Full Text »  |  PDF »

Genomic alterations in human malignant glioma cells associate with the cell resistance to the combination treatment with tumor necrosis factor-related apoptosis-inducing ligand and chemotherapy..

Y.-C. Li, C.-C. Tzeng, J. H. Song, F.-J. Tsia, L.-J. Hsieh, S.-J. Liao, C.-H. Tsai, E. G. Van Meir, C. Hao, and C.-C. Lin (2006)
Clin. Cancer Res. 12, 2716-2729
 |  Abstract »  |  Full Text »  |  PDF »

Biology of HPV in HIV Infection.

J. Palefsky (2006)
Advances in Dental Research 19, 99-105
 |  Abstract »  |  Full Text »  |  PDF »

Prenatal detection of unbalanced chromosomal rearrangements by array CGH.

L Rickman, H Fiegler, C Shaw-Smith, R Nash, V Cirigliano, G Voglino, B L Ng, C Scott, J Whittaker, M Adinolfi, et al. (2006)
J. Med. Genet. 43, 353-361
 |  Abstract »  |  Full Text »  |  PDF »

Limited tissue fixation times and whole genomic amplification do not impact array CGH profiles..

A A Ghazani, N C R Arneson, K Warren, and S J Done (2006)
J. Clin. Pathol. 59, 311-315
 |  Abstract »  |  Full Text »  |  PDF »

Genome-wide differences between microsatellite stable and unstable colorectal tumors.

J. Camps, G. Armengol, J. del Rey, J. J. Lozano, H. Vauhkonen, E. Prat, J. Egozcue, L. Sumoy, S. Knuutila, and R. Miro (2006)
Carcinogenesis 27, 419-428
 |  Abstract »  |  Full Text »  |  PDF »

Serial Analysis of Gene Expression in Adrenocortical Hyperplasia Caused by a Germline PRKAR1A Mutation.

A. Horvath, L. Mathyakina, Q. Vong, V. Baxendale, A. L. Y. Pang, W.-Y. Chan, and C. A. Stratakis (2006)
J. Clin. Endocrinol. Metab. 91, 584-596
 |  Abstract »  |  Full Text »  |  PDF »

BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH).

B. Ylstra, P. van den IJssel, B. Carvalho, R. H. Brakenhoff, and G. A. Meijer (2006)
Nucleic Acids Res. 34, 445-450
 |  Abstract »  |  Full Text »  |  PDF »

ChimerDB--a knowledgebase for fusion sequences.

N. Kim, P. Kim, S. Nam, S. Shin, and S. Lee (2006)
Nucleic Acids Res. 34, D21-D24
 |  Abstract »  |  Full Text »  |  PDF »

Human and mouse oligonucleotide-based array CGH.

P. van den IJssel, M. Tijssen, S.-F. Chin, P. Eijk, B. Carvalho, E. Hopmans, H. Holstege, D. K. Bangarusamy, J. Jonkers, G. A. Meijer, et al. (2005)
Nucleic Acids Res. 33, e192
 |  Abstract »  |  Full Text »  |  PDF »

Array-based comparative genomic hybridization reveals recurrent chromosomal aberrations and Jab1 as a potential target for 8q gain in hepatocellular carcinoma.

M. A. Patil, I. Gutgemann, J. Zhang, C. Ho, S.-T. Cheung, D. Ginzinger, R. Li, K. J. Dykema, S. So, S.-T. Fan, et al. (2005)
Carcinogenesis 26, 2050-2057
 |  Abstract »  |  Full Text »  |  PDF »

Genome-Wide Screening of Genomic Alterations and Their Clinicopathologic Implications in Non-Small Cell Lung Cancers.

T.-M. Kim, S.-H. Yim, J.-S. Lee, M.-S. Kwon, J.-W. Ryu, H.-M. Kang, H. Fiegler, N. P. Carter, and Y.-J. Chung (2005)
Clin. Cancer Res. 11, 8235-8242
 |  Abstract »  |  Full Text »  |  PDF »

Detection of DNA copy number alterations using penalized least squares regression.

T. Huang, B. Wu, P. Lizardi, and H. Zhao (2005)
Bioinformatics 21, 3811-3817
 |  Abstract »  |  Full Text »  |  PDF »

Non-melanoma skin cancer: what drives tumor development and progression?.

P. Boukamp (2005)
Carcinogenesis 26, 1657-1667
 |  Abstract »  |  Full Text »  |  PDF »

Bladder Cancer Stage and Outcome by Array-Based Comparative Genomic Hybridization.

E. Blaveri, J. L. Brewer, R. Roydasgupta, J. Fridlyand, S. DeVries, T. Koppie, S. Pejavar, K. Mehta, P. Carroll, J. P. Simko, et al. (2005)
Clin. Cancer Res. 11, 7012-7022
 |  Abstract »  |  Full Text »  |  PDF »

A precise and scalable method for querying genes in chromosomal banding regions based on cytogenetic annotations.

K.-H. Yen, C. Lee, H.-S. Liu, and C.-L. Ho (2005)
Bioinformatics 21, 3469-3474
 |  Abstract »  |  Full Text »  |  PDF »

A Robust Algorithm for Copy Number Detection Using High-Density Oligonucleotide Single Nucleotide Polymorphism Genotyping Arrays.

Y. Nannya, M. Sanada, K. Nakazaki, N. Hosoya, L. Wang, A. Hangaishi, M. Kurokawa, S. Chiba, D. K. Bailey, G. C. Kennedy, et al. (2005)
Cancer Res. 65, 6071-6079
 |  Abstract »  |  Full Text »  |  PDF »

Isochromosome 17q Is a Negative Prognostic Factor in Poor-Risk Childhood Medulloblastoma Patients.

E. Pan, M. Pellarin, E. Holmes, I. Smirnov, A. Misra, C. G. Eberhart, P. C. Burger, J. A. Biegel, and B. G. Feuerstein (2005)
Clin. Cancer Res. 11, 4733-4740
 |  Abstract »  |  Full Text »  |  PDF »

Unequivocal Delineation of Clinicogenetic Subgroups and Development of a New Model for Improved Outcome Prediction in Neuroblastoma.

J. Vandesompele, M. Baudis, K. De Preter, N. Van Roy, P. Ambros, N. Bown, C. Brinkschmidt, H. Christiansen, V. Combaret, M. Lastowska, et al. (2005)
J. Clin. Oncol. 23, 2280-2299
 |  Abstract »  |  Full Text »  |  PDF »

First Systematic CGH-based Analyses of Ancient DNA Samples of Malformed Fetuses Preserved in the Meckel Anatomical Collection in Halle/Saale (Germany).

H. Tonnies, A. Gerlach, R. Klunker, R. Schultka, and L. Gobbel (2005)
J. Histochem. Cytochem. 53, 381-384
 |  Abstract »  |  Full Text »  |  PDF »

Molecular Diagnosis of Cutaneous Diseases.

K. K. Sra, M. Babb-Tarbox, S. Aboutalebi, P. Rady, G. L. Shipley, D. D. Dao, and S. K. Tyring (2005)
Arch Dermatol 141, 225-241
 |  Abstract »  |  Full Text »  |  PDF »

Detection of genomic imbalances by array based comparative genomic hybridisation in fetuses with multiple malformations.

C Le Caignec, M Boceno, P Saugier-Veber, S Jacquemont, M Joubert, A David, T Frebourg, and J M Rival (2005)
J. Med. Genet. 42, 121-128
 |  Abstract »  |  Full Text »  |  PDF »

Candidate Genes in Breast Cancer Revealed by Microarray-Based Comparative Genomic Hybridization of Archived Tissue.

M. Nessling, K. Richter, C. Schwaenen, P. Roerig, G. Wrobel, S. Wessendorf, B. Fritz, M. Bentz, H.-P. Sinn, B. Radlwimmer, et al. (2005)
Cancer Res. 65, 439-447
 |  Abstract »  |  Full Text »  |  PDF »

Gene Copy Number Change Events at Chromosome 20 and Their Association with Recurrence in Gastric Cancer Patients.

S. H. Yang, M. Y. Seo, H. J. Jeong, H.-C. Jeung, J. Shin, S. C. Kim, S. H. Noh, H. C. Chung, and S. Y. Rha (2005)
Clin. Cancer Res. 11, 612-620
 |  Abstract »  |  Full Text »  |  PDF »

High-Resolution ROMA CGH and FISH Analysis of Aneuploid and Diploid Breast Tumors.

J. HICKS, L. MUTHUSWAMY, A. KRASNITZ, N. NAVIN, M. RIGGS, V. GRUBOR, D. ESPOSITO, J. ALEXANDER, J. TROGE, M. WIGLER, et al. (2005)
Cold Spring Harb Symp Quant Biol 70, 51-63
 |  Abstract »  |  PDF »

Wavelet Transformations of Tumor Expression Profiles Reveals a Pervasive Genome-Wide Imprinting of Aneuploidy on the Cancer Transcriptome.

A. Aggarwal, S. H. Leong, C. Lee, O. L. Kon, and P. Tan (2005)
Cancer Res. 65, 186-194
 |  Abstract »  |  Full Text »  |  PDF »

Preimplantation genetic diagnosis and chromosome analysis of blastomeres using comparative genomic hybridization.

L. Wilton (2005)
Hum. Reprod. Update 11, 33-41
 |  Abstract »  |  Full Text »  |  PDF »

Genetic and Expression Profiles of Squamous Cell Carcinoma of the Head and Neck Correlate with Cisplatin Sensitivity and Resistance in Cell Lines and Patients.

J. Akervall, X. Guo, C.-N. Qian, J. Schoumans, B. Leeser, E. Kort, A. Cole, J. Resau, C. Bradford, T. Carey, et al. (2004)
Clin. Cancer Res. 10, 8204-8213
 |  Abstract »  |  Full Text »  |  PDF »

Array Comparative Genomic Hybridization Analysis of Genomic Alterations in Breast Cancer Subtypes.

L. W. M. Loo, D. I. Grove, E. M. Williams, C. L. Neal, L. A. Cousens, E. L. Schubert, I. N. Holcomb, H. F. Massa, J. Glogovac, C. I. Li, et al. (2004)
Cancer Res. 64, 8541-8549
 |  Abstract »  |  Full Text »  |  PDF »

Aneuploidy and malignancy: an unsolved equation.

P Dey (2004)
J. Clin. Pathol. 57, 1245-1249
 |  Abstract »  |  Full Text »  |  PDF »

Prognostic and biologic significance of chromosomal imbalances assessed by comparative genomic hybridization in multiple myeloma.

N. C. Gutierrez, J. L. Garcia, J. M. Hernandez, E. Lumbreras, M. Castellanos, A. Rasillo, G. Mateo, J. M. Hernandez, S. Perez, A. Orfao, et al. (2004)
Blood 104, 2661-2666
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Distinct Chromosomal Bias of Gene Expression Signatures in the Progression of Hepatocellular Carcinoma.

Y. Midorikawa, S. Tsutsumi, K. Nishimura, N. Kamimura, M. Kano, H. Sakamoto, M. Makuuchi, and H. Aburatani (2004)
Cancer Res. 64, 7263-7270
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Identification of Novel Prognosticators of Outcome in Squamous Cell Carcinoma of the Head and Neck.

V. B. Wreesmann, W. Shi, H. T. Thaler, A. Poluri, D. H. Kraus, D. Pfister, A. R. Shaha, J. P. Shah, P. H. Rao, and B. Singh (2004)
J. Clin. Oncol. 22, 3965-3972
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Chromosome Transfer Induced Aneuploidy Results in Complex Dysregulation of the Cellular Transcriptome in Immortalized and Cancer Cells.

M. B. Upender, J. K. Habermann, L. M. McShane, E. L. Korn, J. C. Barrett, M. J. Difilippantonio, and T. Ried (2004)
Cancer Res. 64, 6941-6949
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Genome-Wide Array-Based Comparative Genomic Hybridization of Diffuse Large B-Cell Lymphoma: Comparison between CD5-Positive and CD5-Negative Cases.

H. Tagawa, S. Tsuzuki, R. Suzuki, S. Karnan, A. Ota, Y. Kameoka, M. Suguro, K. Matsuo, M. Yamaguchi, M. Okamoto, et al. (2004)
Cancer Res. 64, 5948-5955
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Minimal 16q Genomic Loss Implicates Cadherin-11 in Retinoblastoma.

M. N. Marchong, D. Chen, T. W. Corson, C. Lee, M. Harmandayan, E. Bowles, N. Chen, and B. L. Gallie (2004)
Mol. Cancer Res. 2, 495-503
 |  Abstract »  |  Full Text »  |  PDF »

Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes.

R. J. de Leeuw, J. J. Davies, A. Rosenwald, G. Bebb, R. D. Gascoyne, M. J.S. Dyer, L. M. Staudt, J. A. Martinez-Climent, and W. L. Lam (2004)
Hum. Mol. Genet. 13, 1827-1837
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Reliability of comparative genomic hybridization to detect chromosome abnormalities in first polar bodies and metaphase II oocytes.

C. Gutierrez-Mateo, D. Wells, J. Benet, J. F. Sanchez-Garcia, M. G. Bermudez, I. Belil, J. Egozcue, S. Munne, and J. Navarro (2004)
Hum. Reprod. 19, 2118-2125
 |  Abstract »  |  Full Text »  |  PDF »

High-Resolution Global Profiling of Genomic Alterations with Long Oligonucleotide Microarray.

C. Brennan, Y. Zhang, C. Leo, B. Feng, C. Cauwels, A. J. Aguirre, M. Kim, A. Protopopov, and L. Chin (2004)
Cancer Res. 64, 4744-4748
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Array Comparative Genomic Hybridization Analysis of Colorectal Cancer Cell Lines and Primary Carcinomas.

E. J. Douglas, H. Fiegler, A. Rowan, S. Halford, D. C. Bicknell, W. Bodmer, I. P. M. Tomlinson, and N. P. Carter (2004)
Cancer Res. 64, 4817-4825
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Overexpression of PDZK1 within the 1q12-q22 Amplicon Is Likely To Be Associated with Drug-Resistance Phenotype in Multiple Myeloma.

J. Inoue, T. Otsuki, A. Hirasawa, I. Imoto, Y. Matsuo, S. Shimizu, M. Taniwaki, and J. Inazawa (2004)
Am. J. Pathol. 165, 71-81
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Comparative genomic hybridization and karyotyping of human embryonic stem cells reveals the occurrence of an isodicentric X chromosome after long-term cultivation.

J. Inzunza, S. Sahlen, K. Holmberg, A.-M. Stromberg, H. Teerijoki, E. Blennow, O. Hovatta, and H. Malmgren (2004)
Mol. Hum. Reprod. 10, 461-466
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Reanalysis of Cancer Drugs: Old Drugs, New Tricks.

G. F. V. Woude, G. J. Kelloff, R. W. Ruddon, H.-M. Koo, C. C. Sigman, J. C. Barrett, R. W. Day, A. P. Dicker, R. S. Kerbel, D. R. Parkinson, et al. (2004)
Clin. Cancer Res. 10, 3897-3907
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Balanced-PCR amplification allows unbiased identification of genomic copy changes in minute cell and tissue samples.

G. Wang, C. Brennan, M. Rook, J. L. Wolfe, C. Leo, L. Chin, H. Pan, W.-H. Liu, B. Price, and G. M. Makrigiorgos (2004)
Nucleic Acids Res. 32, e76
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A cytogeneticist's perspective on genomic microarrays.

L. G. Shaffer and B. A. Bejjani (2004)
Hum. Reprod. Update 10, 221-226
 |  Abstract »  |  Full Text »  |  PDF »

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