Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 26 June 1992:
Vol. 256. no. 5065, pp. 1796 - 1798
DOI: 10.1126/science.1615323

Articles

Science, Vol 256, Issue 5065, 1796-1798
Copyright © 1992 by American Association for the Advancement of Science


articles

The role of solvent viscosity in the dynamics of protein conformational changes

A Ansari, CM Jones, ER Henry, J Hofrichter, and WA Eaton

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892.

Nanosecond lasers were used to measure the rate of conformational changes in myoglobin after ligand dissociation at ambient temperatures. At low solvent viscosities the rate is independent of viscosity, but at high viscosities it depends on approximately the inverse first power of the viscosity. Kramers theory for unimolecular rate processes can be used to explain this result if the friction term is modified to include protein as well as solvent friction. The theory and experiment suggest that the dominant factor in markedly reducing the rate of conformational changes in myoglobin at low temperatures (less than 200 K) is the very high viscosity (greater than 10(7) centipoise) of the glycerol-water solvent. That is, at low temperatures conformational substates may not be "frozen" so much as "stuck."


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Direct observation of ultrafast folding and denatured state dynamics in single protein molecules.
H. Neuweiler, C. M. Johnson, and A. R. Fersht (2009)
PNAS 106, 18569-18574
   Abstract »    Full Text »    PDF »
A unified model of protein dynamics.
H. Frauenfelder, G. Chen, J. Berendzen, P. W. Fenimore, H. Jansson, B. H. McMahon, I. R. Stroe, J. Swenson, and R. D. Young (2009)
PNAS 106, 5129-5134
   Abstract »    Full Text »    PDF »
Dissection of the Stepwise Mechanism to {beta}-Lactam Formation and Elucidation of a Rate-determining Conformational Change in {beta}-Lactam Synthetase.
M. L. Raber, M. F. Freeman, and C. A. Townsend (2009)
J. Biol. Chem. 284, 207-217
   Abstract »    Full Text »    PDF »
Measuring internal friction of an ultrafast-folding protein.
T. Cellmer, E. R. Henry, J. Hofrichter, and W. A. Eaton (2008)
PNAS 105, 18320-18325
   Abstract »    Full Text »    PDF »
Laser Excitation Studies of the Product Release Steps in the Catalytic Cycle of the Light-driven Enzyme, Protochlorophyllide Oxidoreductase.
D. J. Heyes, M. Sakuma, and N. S. Scrutton (2007)
J. Biol. Chem. 282, 32015-32020
   Abstract »    Full Text »    PDF »
Temperature-dependent heme kinetics with nonexponential binding and barrier relaxation in the absence of protein conformational substates.
X. Ye, D. Ionascu, F. Gruia, A. Yu, A. Benabbas, and P. M. Champion (2007)
PNAS 104, 14682-14687
   Abstract »    Full Text »    PDF »
Primary protein response after ligand photodissociation in carbonmonoxy myoglobin.
A. Sato, Y. Gao, T. Kitagawa, and Y. Mizutani (2007)
PNAS 104, 9627-9632
   Abstract »    Full Text »    PDF »
The inherent structure landscape of a protein.
N. Nakagawa and M. Peyrard (2006)
PNAS 103, 5279-5284
   Abstract »    Full Text »    PDF »
Kinetic Isotope Effect of the L-Phenylalanine Oxidase from Pseudomonas sp. P-501..
Y. Ohta, E. B. Mukouyama, and H. Suzuki (2006)
J. Biochem. 139, 551-555
   Abstract »    Full Text »    PDF »
The Position 68(E11) Side Chain in Myoglobin Regulates Ligand Capture, Bond Formation with Heme Iron, and Internal Movement into the Xenon Cavities.
D. Dantsker, C. Roche, U. Samuni, G. Blouin, J. S. Olson, and J. M. Friedman (2005)
J. Biol. Chem. 280, 38740-38755
   Abstract »    Full Text »    PDF »
A speed limit for conformational change of an allosteric membrane protein.
S. Chakrapani and A. Auerbach (2005)
PNAS 102, 87-92
   Abstract »    Full Text »    PDF »
Different relaxations in myoglobin after photolysis.
M. Levantino, A. Cupane, L. Zimanyi, and P. Ormos (2004)
PNAS 101, 14402-14407
   Abstract »    Full Text »    PDF »
Water and proteins: A love-hate relationship.
Y. Levy and J. N. Onuchic (2004)
PNAS 101, 3325-3326
   Full Text »    PDF »
Spin-dependent mechanism for diatomic ligand binding to heme.
S. Franzen (2002)
PNAS 99, 16754-16759
   Abstract »    Full Text »    PDF »
Spectroscopically and Kinetically Distinct Conformational Populations of Sol-Gel-encapsulated Carbonmonoxy Myoglobin. A COMPARISON WITH HEMOGLOBIN.
U. Samuni, D. Dantsker, I. Khan, A. J. Friedman, E. Peterson, and J. M. Friedman (2002)
J. Biol. Chem. 277, 25783-25790
   Abstract »    Full Text »    PDF »
Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins.
A. Ansari, S. V. Kuznetsov, and Y. Shen (2001)
PNAS 98, 7771-7776
   Abstract »    Full Text »    PDF »
Viscosity and solute dependence of F-actin translocation by rabbit skeletal heavy meromyosin.
P. B. Chase, Y. Chen, K. L. Kulin, and T. L. Daniel (2000)
Am J Physiol Cell Physiol 278, C1088-C1098
   Abstract »    Full Text »    PDF »
Observation of strange kinetics in protein folding.
J. Sabelko, J. Ervin, and M. Gruebele (1999)
PNAS 96, 6031-6036
   Abstract »    Full Text »    PDF »
Limited internal friction in the rate-limiting step of a two-state protein folding reaction.
K. W. Plaxco and D. Baker (1998)
PNAS 95, 13591-13596
   Abstract »    Full Text »    PDF »
A statistical mechanical model for beta -hairpin kinetics.
V. Munoz, E. R. Henry, J. Hofrichter, and W. A. Eaton (1998)
PNAS 95, 5872-5879
   Abstract »    Full Text »    PDF »
On the Origin of Heme Absorption Band Shifts and Associated Protein Structural Relaxation in Myoglobin following Flash Photolysis.
S. Franzen and S. G. Boxer (1997)
J. Biol. Chem. 272, 9655-9660
   Abstract »    Full Text »    PDF »
Two-state models of protein folding kinetics.
R. Zwanzig (1997)
PNAS 94, 148-150
   Abstract »    Full Text »    PDF »
Protein reaction kinetics in a room-temperature glass.
S. Hagen, J Hofrichter, and W. Eaton (1995)
Science 269, 959-962
   Abstract »    PDF »
Non-Arrhenius kinetics for the loop closure of a DNA hairpin.
M. I. Wallace, L. Ying, S. Balasubramanian, and D. Klenerman (2001)
PNAS 98, 5584-5589
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)