Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 28 June 1991:
Vol. 252. no. 5014, pp. 1842 - 1845
DOI: 10.1126/science.2063196

Articles

Science, Vol 252, Issue 5014, 1842-1845
Copyright © 1991 by American Association for the Advancement of Science


articles

Tissue-specific splicing in vivo of the beta-tropomyosin gene: dependence on an RNA secondary structure

D Libri, A Piseri, and MY Fiszman

Institut Pasteur, Paris, France.

The beta-tropomyosin gene in chicken contains two mutually exclusive exons (exons 6A and 6B) which are used by the splicing apparatus in myogenic cells, respectively, before (myoblast stage) and after (myotube stage) differentiation. The myoblast splicing pattern is shown to depend on multiple sequence elements that are located in the upstream intron and in the exon 6B and that exert a negative control over exon 6B splicing. This regulation of splicing is due, at least in part, to a secondary structure of the primary transcript, which limits in vivo the accessibility of exon 6B in myoblasts.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Tropomyosin-Based Regulation of the Actin Cytoskeleton in Time and Space.
P. Gunning, G. O'neill, and E. Hardeman (2008)
Physiol Rev 88, 1-35
   Abstract »    Full Text »    PDF »
MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T.
M. B. Warf and J. A. Berglund (2007)
RNA 13, 2238-2251
   Abstract »    Full Text »    PDF »
Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes.
N. N. Singh, R. N. Singh, and E. J. Androphy (2007)
Nucleic Acids Res. 35, 371-389
   Abstract »    Full Text »    PDF »
The iStem, a Long-Range RNA Secondary Structure Element Required for Efficient Exon Inclusion in the Drosophila Dscam Pre-mRNA.
J. M. Kreahling and B. R. Graveley (2005)
Mol. Cell. Biol. 25, 10251-10260
   Abstract »    Full Text »    PDF »
Influence of RNA Secondary Structure on the Pre-mRNA Splicing Process.
E. Buratti and F. E. Baralle (2004)
Mol. Cell. Biol. 24, 10505-10514
   Full Text »    PDF »
hnRNP A1 and the SR Proteins ASF/SF2 and SC35 Have Antagonistic Functions in Splicing of {beta}-Tropomyosin Exon 6B.
A. Expert-Bezancon, A. Sureau, P. Durosay, R. Salesse, H. Groeneveld, J. P. Lecaer, and J. Marie (2004)
J. Biol. Chem. 279, 38249-38259
   Abstract »    Full Text »    PDF »
Insulin Regulates Protein Kinase C{beta}II Alternative Splicing in Multiple Target Tissues: Development of a Hormonally Responsive Heterologous Minigene.
N. A. Patel, H. S. Apostolatos, K. Mebert, C. E. Chalfant, J. E. Watson, T. S. Pillay, J. Sparks, and D. R. Cooper (2004)
Mol. Endocrinol. 18, 899-911
   Abstract »    Full Text »    PDF »
A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing.
T. W. Hefferon, J. D. Groman, C. E. Yurk, and G. R. Cutting (2004)
PNAS 101, 3504-3509
   Abstract »    Full Text »    PDF »
An Intronic Enhancer Regulates Splicing of the Twintron of Drosophila melanogaster prospero Pre-mRNA by Two Different Spliceosomes.
P. Scamborova, A. Wong, and J. A. Steitz (2004)
Mol. Cell. Biol. 24, 1855-1869
   Abstract »    Full Text »    PDF »
RNA Folding Affects the Recruitment of SR Proteins by Mouse and Human Polypurinic Enhancer Elements in the Fibronectin EDA Exon.
E. Buratti, A. F. Muro, M. Giombi, D. Gherbassi, A. Iaconcig, and F. E. Baralle (2004)
Mol. Cell. Biol. 24, 1387-1400
   Abstract »    Full Text »    PDF »
Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene.
Y. Chen and W. Stephan (2003)
PNAS 100, 11499-11504
   Abstract »    Full Text »    PDF »
Conserved sequence elements associated with exon skipping.
E. Miriami, H. Margalit, and R. Sperling (2003)
Nucleic Acids Res. 31, 1974-1983
   Abstract »    Full Text »    PDF »
A Non-sequence-specific Double-stranded RNA Structural Element Regulates Splicing of Two Mutually Exclusive Exons of Fibroblast Growth Factor Receptor 2 (FGFR2).
S. J. Muh, R. H. Hovhannisyan, and R. P. Carstens (2002)
J. Biol. Chem. 277, 50143-50154
   Abstract »    Full Text »    PDF »
Effects of Breed, Parity, and Folic Acid Supplement on the Expression of Folate Metabolism Genes in Endometrial and Embryonic Tissues from Sows in Early Pregnancy.
M. Vallee, F. Guay, D. Beaudry, J. Matte, R. Blouin, J.-P. Laforest, M. Lessard, and M.-F. Palin (2002)
Biol Reprod 67, 1259-1267
   Abstract »    Full Text »    PDF »
A Secondary Structure That Contains the 5' and 3' Splice Sites Suppresses Splicing of Duck Hepatitis B Virus Pregenomic RNA.
D. D. Loeb, A. A. Mack, and R. Tian (2002)
J. Virol. 76, 10195-10202
   Abstract »    Full Text »    PDF »
Heterogeneous Nuclear Ribonucleoprotein (hnRNP) K Is a Component of an Intronic Splicing Enhancer Complex That Activates the Splicing of the Alternative Exon 6A from Chicken beta -Tropomyosin Pre-mRNA.
A. Expert-Bezancon, J. P. Le Caer, and J. Marie (2002)
J. Biol. Chem. 277, 16614-16623
   Abstract »    Full Text »    PDF »
Alternative Ribonucleic Acid Processing in Endocrine Systems.
H. Lou and R. F. Gagel (2001)
Endocr. Rev. 22, 205-225
   Abstract »    Full Text »
Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3' splice site and its cis-regulatory element: possible involvement in RNA splicing.
S. Jacquenet, D. Ropers, P. S. Bilodeau, L. Damier, A. Mougin, C. M. Stoltzfus, and C. Branlant (2001)
Nucleic Acids Res. 29, 464-478
   Abstract »    Full Text »    PDF »
Positive and Negative Intronic Regulatory Elements Control Muscle-Specific Alternative Exon Splicing of Drosophila Myosin Heavy Chain Transcripts.
D. M. Standiford, W. T. Sun, M. B. Davis, and C. P. Emerson , Jr. (2001)
Genetics 157, 259-271
   Abstract »    Full Text »
Identification of cis-Elements Regulating Exon 15 Splicing of the Amyloid Precursor Protein Pre-mRNA.
C. Bergsdorf, K. Paliga, S. Kreger, C. L. Masters, and K. Beyreuther (2000)
J. Biol. Chem. 275, 2046-2056
   Abstract »    Full Text »    PDF »
5' Splice Site Mutations in tau Associated with the Inherited Dementia FTDP-17 Affect a Stem-Loop Structure That Regulates Alternative Splicing of Exon 10.
A. Grover, H. Houlden, M. Baker, J. Adamson, J. Lewis, G. Prihar, S. Pickering-Brown, K. Duff, and M. Hutton (1999)
J. Biol. Chem. 274, 15134-15143
   Abstract »    Full Text »    PDF »
Regulation of Fibronectin EDA Exon Alternative Splicing: Possible Role of RNA Secondary Structure for Enhancer Display.
A. F. Muro, M. Caputi, R. Pariyarath, F. Pagani, E. Buratti, and F. E. Baralle (1999)
Mol. Cell. Biol. 19, 2657-2671
   Abstract »    Full Text »    PDF »
Polypyrimidine Tract Binding Protein Functions as a Repressor To Regulate Alternative Splicing of alpha -Actinin Mutally Exclusive Exons.
J. Southby, C. Gooding, and C. W. J. Smith (1999)
Mol. Cell. Biol. 19, 2699-2711
   Abstract »    Full Text »    PDF »
Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta -tropomyosin gene.
C. D. Chen, R. Kobayashi, and D. M. Helfman (1999)
Genes & Dev. 13, 593-606
   Abstract »    Full Text »
Mutation in the tau gene in familial multiple system tauopathy with presenile dementia.
M. G. Spillantini, J. R. Murrell, M. Goedert, M. R. Farlow, A. Klug, and B. Ghetti (1998)
PNAS 95, 7737-7741
   Abstract »    Full Text »    PDF »
Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme.
J. A. Esteban, N. G. Walter, G. Kotzorek, J. E. Heckman, and J. M. Burke (1998)
PNAS 95, 6091-6096
   Abstract »    Full Text »    PDF »
Ironing out the kinks: splicing and translation in bacteria.
S. A. Woodson (1998)
Genes & Dev. 12, 1243-1247
   Full Text »
Sequence Divergence Associated with Species-specific Splicing of the Nonmuscle beta-Tropomyosin Alternative Exon.
A.-M. Pret and M. Y. Fiszman (1996)
J. Biol. Chem. 271, 11511-11517
   Abstract »    Full Text »    PDF »
Regulation of alternative pre-mRNA splicing by a novel repeated hexanucleotide element..
G S Huh and R O Hynes (1994)
Genes & Dev. 8, 1561-1574
   Abstract »    PDF »
Regulation of splicing at an intermediate step in the formation of the spliceosome..
J Vilardell and J R Warner (1994)
Genes & Dev. 8, 211-220
   Abstract »    PDF »
General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer..
Q Sun, A Mayeda, R K Hampson, A R Krainer, and F M Rottman (1993)
Genes & Dev. 7, 2598-2608
   Abstract »    PDF »
Alternative splicing of beta-tropomyosin pre-mRNA: cis-acting elements and cellular factors that block the use of a skeletal muscle exon in nonmuscle cells..
W Guo, G J Mulligan, S Wormsley, and D M Helfman (1991)
Genes & Dev. 5, 2096-2107
   Abstract »    PDF »
RNA secondary structure repression of a muscle-specific exon in HeLa cell nuclear extracts.
B Clouet d'Orval, Y d'Aubenton Carafa, P Sirand-Pugnet, M Gallego, E Brody, and J Marie (1991)
Science 252, 1823-1828
   Abstract »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)