Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 27 April 1990:
Vol. 248. no. 4954, pp. 486 - 490
DOI: 10.1126/science.1970441

Articles

Science, Vol 248, Issue 4954, 486-490
Copyright © 1990 by American Association for the Advancement of Science


articles

A bacterial enhancer functions to tether a transcriptional activator near a promoter

A Wedel, DS Weiss, D Popham, P Droge, and S Kustu

Department of Plant Pathology, University of California, Berkeley 94720.

The nitrogen regulatory protein NtrC of enteric bacteria activates transcription of the glnA gene by catalyzing isomerization of closed complexes between RNA polymerase and the glnA promoter to open complexes. NtrC binds to sites upstream of glnA that have properties of eukaryotic transcriptional enhancers. NtrC-binding sites were found to facilitate open complex formation when these sites and the glnA promoter were located on different rings of a singly linked catenane, but not when the two rings were decatenated. The results provide evidence that NtrC contacts RNA polymerase-promoter complexes in a process mediated by formation of a DNA loop. NtrC-binding sites serve to tether NtrC near the glnA promoter, thereby increasing the frequency of collisions between NtrC and polymerase-promoter complexes.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Construction and functional analyses of a comprehensive {sigma}54 site-directed mutant library using alanine-cysteine mutagenesis.
Y. Xiao, S. R. Wigneshweraraj, R. Weinzierl, Y.-P. Wang, and M. Buck (2009)
Nucleic Acids Res.
   Abstract »    Full Text »    PDF »
Identification of the binding site of the {sigma}54 hetero-oligomeric FleQ/FleT activator in the flagellar promoters of Rhodobacter sphaeroides.
J. Pena-Sanchez, S. Poggio, U. Flores-Perez, A. Osorio, C. Domenzain, G. Dreyfus, and L. Camarena (2009)
Microbiology 155, 1669-1679
   Abstract »    Full Text »    PDF »
Mutations of the Act Promoter in Myxococcus xanthus.
T. M. A. Gronewold and D. Kaiser (2007)
J. Bacteriol. 189, 1836-1844
   Abstract »    Full Text »    PDF »
Chromatin structure can strongly facilitate enhancer action over a distance.
M. A. Rubtsov, Y. S. Polikanov, V. A. Bondarenko, Y.-H. Wang, and V. M. Studitsky (2006)
PNAS 103, 17690-17695
   Abstract »    Full Text »    PDF »
The C-terminal RpoN Domain of {sigma}54 Forms an Unpredicted Helix-Turn-Helix Motif Similar to Domains of {sigma}70.
M. Doucleff, L. T. Malak, J. G. Pelton, and D. E. Wemmer (2005)
J. Biol. Chem. 280, 41530-41536
   Abstract »    Full Text »    PDF »
Characterization of Enhancer Binding by the Vibrio cholerae Flagellar Regulatory Protein FlrC.
N. E. Correa and K. E. Klose (2005)
J. Bacteriol. 187, 3158-3170
   Abstract »    Full Text »    PDF »
Nonhomologous End-Joining Ligation Transfers DNA Regulatory Elements between Cointroduced Plasmids.
T. Ishikawa, E. J. Lee, and J. L. Jameson (2004)
Mol. Cell. Biol. 24, 8323-8331
   Abstract »    Full Text »    PDF »
Evidence for a Second Interaction between the Regulatory Amino-terminal and Central Output Domains of the Response Regulator NtrC (Nitrogen Regulator I) in Escherichia coli.
A. C. Harrod, X. Yang, M. Junker, and L. Reitzer (2004)
J. Biol. Chem. 279, 2350-2359
   Abstract »    Full Text »    PDF »
Transient XylR binding to the UAS of the Pseudomonas putida {sigma}54 promoter Pu revealed with high intensity UV footprinting in vivo.
M. Valls and V. de Lorenzo (2003)
Nucleic Acids Res. 31, 6926-6934
   Abstract »    Full Text »    PDF »
New Roles for Conserved Regions within a sigma 54-dependent Enhancer-binding Protein.
C. M. Lew and J. D. Gralla (2002)
J. Biol. Chem. 277, 41517-41524
   Abstract »    Full Text »    PDF »
Binding affinity of Escherichia coli RNA polymerase{middle dot}{sigma}54 holoenzyme for the glnAp2, nifH and nifL promoters.
S. K. Vogel, A. Schulz, and K. Rippe (2002)
Nucleic Acids Res. 30, 4094-4101
   Abstract »    Full Text »    PDF »
Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of 'Pseudomonas azelaica' HBP1.
M. C. M. Jaspers, M. Sturme, and J. R. van der Meer (2001)
Microbiology 147, 2183-2194
   Abstract »    Full Text »    PDF »
Frankia sequences exhibiting RNA polymerase promoter activity.
J. V. Bock, T. Battershell, J. Wiggington, T. R. John, and J. D. Johnson (2001)
Microbiology 147, 499-506
   Abstract »    Full Text »
"Switch I" mutant forms of the bacterial enhancer-binding protein NtrC that perturb the response to DNA.
D. Yan and S. Kustu (1999)
PNAS 96, 13142-13146
   Abstract »    Full Text »    PDF »
Mutations Affecting Motifs of Unknown Function in the Central Domain of Nitrogen Regulatory Protein C.
J. Li, L. Passaglia, I. Rombel, D. Yan, and S. Kustu (1999)
J. Bacteriol. 181, 5443-5454
   Abstract »    Full Text »
An enhancer element located downstream of the major glutamate dehydrogenase gene of Bacillus subtilis.
B. R. Belitsky and A. L. Sonenshein (1999)
PNAS 96, 10290-10295
   Abstract »    Full Text »    PDF »
Physical evidence for a phosphorylation-dependent conformational change in the enhancer-binding protein NtrC.
I. Hwang, T. Thorgeirsson, J. Lee, S. Kustu, and Y.-K. Shin (1999)
PNAS 96, 4880-4885
   Abstract »    Full Text »    PDF »
A bacterial ATP-dependent, enhancer binding protein that activates the housekeeping RNA polymerase.
W. C. Bowman and R. G. Kranz (1998)
Genes & Dev. 12, 1884-1893
   Abstract »    Full Text »
Activation and Repression of Transcription by Differential Contact: Two Sides of a Coin.
S. Roy, S. Garges, and S. Adhya (1998)
J. Biol. Chem. 273, 14059-14062
   Full Text »    PDF »
Mutational Analysis of the Phosphate-Binding Loop of Rhizobium meliloti DctD, a sigma 54-Dependent Activator.
Y. Gao, Y.-K. Wang, and T. R. Hoover (1998)
J. Bacteriol. 180, 2792-2795
   Abstract »    Full Text »
A protein-induced DNA bend increases the specificity of a prokaryotic enhancer-binding protein.
J. Dworkin, A. J. Ninfa, and P. Model (1998)
Genes & Dev. 12, 894-900
   Abstract »    Full Text »
The Bacterial Enhancer-binding Protein NtrC as a Molecular Machine.
I. ROMBEL, A. NORTH, I. HWANG, C. WYMAN, and S. KUSTU (1998)
Cold Spring Harb Symp Quant Biol 63, 157-166
   Abstract »    PDF »
Activation of RNA polymerase II by topologically linked DNA-tracking proteins.
M. Ouhammouch, M. H. Sayre, J. T. Kadonaga, and E. P. Geiduschek (1997)
PNAS 94, 6718-6723
   Abstract »    Full Text »    PDF »
Two domains within sigma N (sigma 54) cooperate for DNA binding.
W. V. Cannon, M. K. Chaney, X.-Y. Wang, and M. Buck (1997)
PNAS 94, 5006-5011
   Abstract »    Full Text »    PDF »
In Vitro Reconstitution and Characterization of the Rhodobacter capsulatus NtrB and NtrC Two-component System.
P. J. Cullen, W. C. Bowman, and R. G. Kranz (1996)
J. Biol. Chem. 271, 6530-6536
   Abstract »    Full Text »    PDF »
Oligomerization of NTRC at the glnA enhancer is required for transcriptional activation..
S C Porter, A K North, A B Wedel, and S Kustu (1993)
Genes & Dev. 7, 2258-2273
   Abstract »    PDF »
DNA position-specific repression of transcription by a Drosophila zinc finger protein..
P K Geyer and V G Corces (1992)
Genes & Dev. 6, 1865-1873
   Abstract »    PDF »
A transcriptional enhancer whose function imposes a requirement that proteins track along DNA.
D. Herendeen, G. Kassavetis, and E. Geiduschek (1992)
Science 256, 1298-1303
   Abstract »    PDF »
In Vivo UV Laser Footprinting of the Pseudomonas putidasigma 54Pu Promoter Reveals That Integration Host Factor Couples Transcriptional Activity to Growth Phase.
M. Valls, M. Buckle, and V. de Lorenzo (2002)
J. Biol. Chem. 277, 2169-2175
   Abstract »    Full Text »    PDF »
DNA supercoiling allows enhancer action over a large distance.
Y. Liu, V. Bondarenko, A. Ninfa, and V. M. Studitsky (2001)
PNAS 98, 14883-14888
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)