Science 26 March 1982: Vol. 215. no. 4540, pp. 1577 - 1585 DOI: 10.1126/science.7041255

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The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses.

G. Thebaud, J. Chad{oelig}uf, M. J. Morelli, J. W. McCauley, and D. T. Haydon (2009)
Proc R Soc B
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Point Mutation Rate of Bacteriophage {Phi}X174.

J. M. Cuevas, S. Duffy, and R. Sanjuan (2009)
Genetics 183, 747-749
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Molecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination.

C. Tolf, M. Gullberg, E. S. Johansson, R. B. Tesh, B. Andersson, and A. M. Lindberg (2009)
J. Gen. Virol. 90, 843-853
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The Proteomic Constraint and Its Role in Molecular Evolution.

S. E. Massey (2008)
Mol. Biol. Evol. 25, 2557-2565
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Hidden Virulence Determinants in a Viral Quasispecies In Vivo.

M. Sanz-Ramos, F. Diaz-San Segundo, C. Escarmis, E. Domingo, and N. Sevilla (2008)
J. Virol. 82, 10465-10476
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Influence of the Mutant Spectrum in Viral Evolution: Focused Selection of Antigenic Variants in a Reconstructed Viral Quasispecies.

V. Martin and E. Domingo (2008)
Mol. Biol. Evol. 25, 1544-1554
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Persistence of foot-and-mouth disease virus in cell culture revisited: implications for contingency in evolution.

M. Herrera, A. Grande-Perez, C. Perales, and E. Domingo (2008)
J. Gen. Virol. 89, 232-244
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Environment Determines Fidelity for an RNA Virus Replicase.

J. S. Pita, J. R. de Miranda, W. L. Schneider, and M. J. Roossinck (2007)
J. Virol. 81, 9072-9077
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Guinea Pig-Adapted Foot-and-Mouth Disease Virus with Altered Receptor Recognition Can Productively Infect a Natural Host.

J. I. Nunez, N. Molina, E. Baranowski, E. Domingo, S. Clark, A. Burman, S. Berryman, T. Jackson, and F. Sobrino (2007)
J. Virol. 81, 8497-8506
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Role of the mutant spectrum in adaptation and replication of West Nile virus.

A. T. Ciota, K. A. Ngo, A. O. Lovelace, A. F. Payne, Y. Zhou, P.-Y. Shi, and L. D. Kramer (2007)
J. Gen. Virol. 88, 865-874
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The cost of replication fidelity in human immunodeficiency virus type 1.

V. Furio, A. Moya, and R. Sanjuan (2007)
Proc R Soc B 274, 225-230
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Quantifying antagonistic epistasis in a multifunctional RNA secondary structure of the Rous sarcoma virus.

R. Sanjuan (2006)
J. Gen. Virol. 87, 1595-1602
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Chaos and Order in Spontaneous Mutation.

J. W. Drake (2006)
Genetics 173, 1-8
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Effect of Bottlenecking on Evolution of the Nonstructural Protein 3 Gene of Hepatitis C Virus during Sexually Transmitted Acute Resolving Infection.

J. Quer, J. I. Esteban, J. Cos, S. Sauleda, L. Ocana, M. Martell, T. Otero, M. Cubero, E. Palou, P. Murillo, et al. (2005)
J. Virol. 79, 15131-15141
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Selectionism and Neutralism in Molecular Evolution.

M. Nei (2005)
Mol. Biol. Evol. 22, 2318-2342
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Adaptive Value of High Mutation Rates of RNA Viruses: Separating Causes from Consequences.

S. F. Elena and R. Sanjuan (2005)
J. Virol. 79, 11555-11558
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Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection.

G. Jerzak, K. A. Bernard, L. D. Kramer, and G. D. Ebel (2005)
J. Gen. Virol. 86, 2175-2183
 |  Abstract »  |  Full Text »  |  PDF »

The cost of replication fidelity in an RNA virus.

V. Furio, A. Moya, and R. Sanjuan (2005)
PNAS 102, 10233-10237
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Epistasis and the Adaptability of an RNA Virus.

R. Sanjuan, J. M. Cuevas, A. Moya, and S. F. Elena (2005)
Genetics 170, 1001-1008
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Molecular Epidemiology of Hepatitis C Virus Genotype 4 Isolates in Egypt and Analysis of the Variability of Envelope Proteins E1 and E2 in Patients with Chronic Hepatitis.

D. Genovese, S. Dettori, C. Argentini, U. Villano, P. Chionne, M. Angelico, and M. Rapicetta (2005)
J. Clin. Microbiol. 43, 1902-1909
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Mutations in Turnip mosaic virus genomes that have adapted to Raphanus sativus.

Z. Tan, A. J. Gibbs, Y. Tomitaka, F. Sanchez, F. Ponz, and K. Ohshima (2005)
J. Gen. Virol. 86, 501-510
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GENETIC AND PHENOTYPIC VARIATION OF WEST NILE VIRUS IN NEW YORK, 2000-2003.

G. D. EBEL, J. CARRICABURU, D. YOUNG, K. A. BERNARD, and L. D. KRAMER (2004)
Am J Trop Med Hyg 71, 493-500
 |  Abstract »  |  Full Text »  |  PDF »

Nitric Oxide as an Endogenous Mutagen for Sendai Virus without Antiviral Activity.

J. Yoshitake, T. Akaike, T. Akuta, F. Tamura, T. Ogura, H. Esumi, and H. Maeda (2004)
J. Virol. 78, 8709-8719
 |  Abstract »  |  Full Text »  |  PDF »

Biased Hypermutagenesis Associated with Mutations in an Untranslated Hairpin of an RNA Virus.

J. C. McCormack and A. E. Simon (2004)
J. Virol. 78, 7813-7817
 |  Abstract »  |  Full Text »  |  PDF »

Molecular Population Genetics of Cucumber Mosaic Virus in California: Evidence for Founder Effects and Reassortment.

H.-X. Lin, L. Rubio, A. B. Smythe, and B. W. Falk (2004)
J. Virol. 78, 6666-6675
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Evolution of hepatitis C virus variants following blood transfusion from one infected donor to several recipients: a long-term follow-up.

A. Love, V. Molnegren, A.-S. Mansson, A. Smaradottir, S. B. Thorsteinsson, and A. Widell (2004)
J. Gen. Virol. 85, 441-450
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Probability of Fixation of an Advantageous Mutant in a Viral Quasispecies.

C. O. Wilke (2003)
Genetics 163, 467-474
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Genetic recombination in wild-type poliovirus.

G. Dahourou, S. Guillot, O. Le Gall, and R. Crainic (2002)
J. Gen. Virol. 83, 3103-3110
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Inaugural Article: A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades.

Y. Tanaka, K. Hanada, M. Mizokami, A. E. T. Yeo, J. W.-K. Shih, T. Gojobori, and H. J. Alter (2002)
PNAS 99, 15584-15589
 |  Abstract »  |  Full Text »  |  PDF »

Full-length genome analysis of natural isolates of vesicular stomatitis virus (Indiana 1 serotype) from North, Central and South America.

L. L. Rodriguez, S. J. Pauszek, T. A. Bunch, and K. R. Schumann (2002)
J. Gen. Virol. 83, 2475-2483
 |  Abstract »  |  Full Text »  |  PDF »

Natural genetic recombination between co-circulating heterotypic enteroviruses.

G. Oprisan, M. Combiescu, S. Guillot, V. Caro, A. Combiescu, F. Delpeyroux, and R. Crainic (2002)
J. Gen. Virol. 83, 2193-2200
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Persistent and Transient Replication of Full-Length Hepatitis C Virus Genomes in Cell Culture.

T. Pietschmann, V. Lohmann, A. Kaul, N. Krieger, G. Rinck, G. Rutter, D. Strand, and R. Bartenschlager (2002)
J. Virol. 76, 4008-4021
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Neurovirulence of Type 1 Polioviruses Isolated from Sewage in Japan.

H. Horie, H. Yoshida, K. Matsuura, M. Miyazawa, Y. Ota, T. Nakayama, Y. Doi, and S. Hashizume (2002)
Appl. Envir. Microbiol. 68, 138-142
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Quasispecies Theory in Virology.

E. Domingo (2002)
J. Virol. 76, 463-465
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The effect of mosquito passage on the La Crosse virus genotype.

M. K. Borucki, B. J. Kempf, C. D. Blair, and B. J. Beaty (2001)
J. Gen. Virol. 82, 2919-2926
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Intranasal Inoculation with the Olfactory Bulb Line Variant of Mouse Hepatitis Virus Causes Extensive Destruction of the Olfactory Bulb and Accelerated Turnover of Neurons in the Olfactory Epithelium of Mice.

J. E. Schwob, S. Saha, S. L. Youngentob, and B. Jubelt (2001)
Chem Senses 26, 937-952
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Genetic Variation of Citrus Tristeza Virus Isolates from California and Spain: Evidence for Mixed Infections and Recombination.

L. Rubio, M. A. Ayllon, P. Kong, A. Fernandez, M. Polek, J. Guerri, P. Moreno, and B. W. Falk (2001)
J. Virol. 75, 8054-8062
 |  Abstract »  |  Full Text »  |  PDF »

Genetic Diversity in RNA Virus Quasispecies Is Controlled by Host-Virus Interactions.

W. L. Schneider and M. J. Roossinck (2001)
J. Virol. 75, 6566-6571
 |  Abstract »  |  Full Text »

A Single Amino Acid Substitution in Nonstructural Protein 3A Can Mediate Adaptation of Foot-and-Mouth Disease Virus to the Guinea Pig.

J. I. Núñez, E. Baranowski, N. Molina, C. M. Ruiz-Jarabo, C. Sánchez, E. Domingo, and F. Sobrino (2001)
J. Virol. 75, 3977-3983
 |  Abstract »  |  Full Text »

2000 Fleming Lecture. The origin and evolution of hepatitis viruses in humans.

P. Simmonds (2001)
J. Gen. Virol. 82, 693-712
 |  Abstract »  |  Full Text »

Geographically distant isolates of the crinivirus Cucurbit yellow stunting disorder virus show very low genetic diversity in the coat protein gene.

L. Rubio, Y. Abou-Jawdah, H.-X. Lin, and B. W. Falk (2001)
J. Gen. Virol. 82, 929-933
 |  Abstract »  |  Full Text »

Molecular Strategies for Interrupting Arthropod-Borne Virus Transmission by Mosquitoes.

C. D. Blair, Z. N. Adelman, and K. E. Olson (2000)
Clin. Microbiol. Rev. 13, 651-661
 |  Abstract »  |  Full Text »  |  PDF »

Sequence Variability of Borna Disease Virus: Resistance to Superinfection May Contribute to High Genome Stability in Persistently Infected Cells.

S. Formella, C. Jehle, C. Sauder, P. Staeheli, and M. Schwemmle (2000)
J. Virol. 74, 7878-7883
 |  Abstract »  |  Full Text »

Evolutionarily Related Sindbis-Like Plant Viruses Maintain Different Levels of Population Diversity in a Common Host.

W. L. Schneider and M. J. Roossinck (2000)
J. Virol. 74, 3130-3134
 |  Abstract »  |  Full Text »

Molecular epidemiology of coxsackievirus B4 and disclosure of the correct VP1/2Apro cleavage site: evidence for high genomic diversity and long-term endemicity of distinct genotypes.

M. N. Mulders, M. Salminen, N. Kalkkinen, and T. Hovi (2000)
J. Gen. Virol. 81, 803-812
 |  Abstract »  |  Full Text »

Cell Recognition by Foot-and-Mouth Disease Virus That Lacks the RGD Integrin-Binding Motif: Flexibility in Aphthovirus Receptor Usage.

E. Baranowski, C. M. Ruiz-Jarabo, N. Sevilla, D. Andreu, E. Beck, and E. Domingo (2000)
J. Virol. 74, 1641-1647
 |  Abstract »  |  Full Text »

Nucleotide and Amino Acid Complexity of Hepatitis C Virus Quasispecies in Serum and Liver.

B. Cabot, M. Martell, J. I. Esteban, S. Sauleda, T. Otero, R. Esteban, J. Guàrdia, and J. Gómez (2000)
J. Virol. 74, 805-811
 |  Abstract »  |  Full Text »

Genetic, geographical and temporal variation of porcine reproductive and respiratory syndrome virus in Illinois.

T. L. Goldberg, E. C. Hahn, R. M. Weigel, and G. Scherba (2000)
J. Gen. Virol. 81, 171-179
 |  Abstract »  |  Full Text »

Molecular Mechanisms of Coxsackievirus Persistence in Chronic Inflammatory Myopathy: Viral RNA Persists through Formation of a Double-Stranded Complex without Associated Genomic Mutations or Evolution.

P. E. Tam and R. P. Messner (1999)
J. Virol. 73, 10113-10121
 |  Abstract »  |  Full Text »

Mutation rates among RNA viruses.

J. W. Drake and J. J. Holland (1999)
PNAS 96, 13910-13913
 |  Abstract »  |  Full Text »  |  PDF »

Evolutionary aspects of recombination in RNA viruses.

M. Worobey and E. C. Holmes (1999)
J. Gen. Virol. 80, 2535-2543
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Genetic Basis for Immunological Aberrations in Poliovirus Sabin Serotype 3 Strains Imported in The Netherlands.

J. H. J. Reimerink, H. G. A. M. van der Avoort, A. M. van Loon, and M. P. G. Koopmans (1999)
J. Clin. Microbiol. 37, 2393-2398
 |  Abstract »  |  Full Text »

Genetic Divergence with Emergence of Novel Phenotypic Variants of Equine Arteritis Virus during Persistent Infection of Stallions.

J. F. Hedges, U. B. R. Balasuriya, P. J. Timoney, W. H. McCollum, and N. J. MacLachlan (1999)
J. Virol. 73, 3672-3681
 |  Abstract »  |  Full Text »

Topical Review: La Crosse and Other Forms of California Encephalitis.

R. S. Rust, W. H. Thompson, C. G. Matthews, B. J. Beaty, and R. W.M. Chun (1999)
J Child Neurol 14, 1-14
 |  Abstract »  |  PDF »

Rapid Selection in Modified BHK-21 Cells of a Foot-and-Mouth Disease Virus Variant Showing Alterations in Cell Tropism.

C. Escarmis, E. C. Carrillo, M. Ferrer, J. F. G. Arriaza, N. Lopez, C. Tami, N. Verdaguer, E. Domingo, and M. T. Franze-Fernandez (1998)
J. Virol. 72, 10171-10179
 |  Abstract »  |  Full Text »  |  PDF »

Resistance to Human Immunodeficiency Virus Type 1 Protease Inhibitors.

D. Boden and M. Markowitz (1998)
Antimicrob. Agents Chemother. 42, 2775-2783
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Sex and the Evolution of Intrahost Competition in RNA Virus {phi}6.

P. E. Turner and L. Chao (1998)
Genetics 150, 523-532
 |  Abstract »  |  Full Text »

The Effects of Pharmacological and Lentivirus-Induced Immune Suppression on Orbivirus Pathogenesis: Assessment of Virus Burden in Blood Monocytes and Tissues by Reverse Transcription-In Situ PCR.

S. J. Brodie, W. C. Wilson, P. M. O'Hearn, D. Muthui, K. Diem, and L. D. Pearson (1998)
J. Virol. 72, 5599-5609
 |  Abstract »  |  Full Text »  |  PDF »

Differentiation and Characterization of Enteroviruses by Computer-Assisted Viral Protein Fingerprinting.

D. T. Holland, J. Senne, C. R. Peter, C. Urmeneta, and J. D. Connor (1998)
J. Clin. Microbiol. 36, 1588-1594
 |  Abstract »  |  Full Text »

Epizootic Hemorrhagic Disease: Analysis of Tissues by Amplification and In Situ Hybridization Reveals Widespread Orbivirus Infection at Low Copy Numbers.

S. J. Brodie, K. D. Bardsley, K. Diem, J. O. Mecham, S. E. Norelius, and W. C. Wilson (1998)
J. Virol. 72, 3863-3871
 |  Abstract »  |  Full Text »  |  PDF »

The Mutation Rate and Cancer.

A. L. Jackson and L. A. Loeb (1998)
Genetics 148, 1483-1490
 |  Abstract »  |  Full Text »  |  PDF »

Molecular Typing of Enteroviruses: Current Status and Future Requirements.

P. Muir, U. Kammerer, K. Korn, M. N. Mulders, T. Poyry, B. Weissbrich, R. Kandolf, G. M. Cleator, and A. M. van Loon (1998)
Clin. Microbiol. Rev. 11, 202-227
 |  Abstract »  |  Full Text »  |  PDF »

Genetic recombination of poliovirus in a cell-free system.

R. Duggal, A. Cuconati, M. Gromeier, and E. Wimmer (1997)
PNAS 94, 13786-13791
 |  Abstract »  |  Full Text »  |  PDF »

Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts.

Y. Yamaguchi and T. Gojobori (1997)
PNAS 94, 1264-1269
 |  Abstract »  |  Full Text »  |  PDF »

The Emerging Genetic Diversity of HIV: The Importance of Global Surveillance for Diagnostics, Research, and Prevention.

D. J. Hu, T. J. Dondero, M. A. Rayfield, J. R. George, G. Schochetman, H. W. Jaffe, C.-C. Luo, M. L. Kalish, B. G. Weniger, C.-P. Pau, et al. (1996)
JAMA 275, 210-216
 |  Abstract »  |  PDF »

Lack of protective immunity against reinfection with hepatitis C virus.

P Farci, H. Alter, S Govindarajan, D. Wong, R Engle, R. Lesniewski, I. Mushahwar, S. Desai, R. Miller, N Ogata, et al. (1992)
Science 258, 135-140
 |  Abstract »  |  PDF »

Cap-independent translation of encephalomyocarditis virus RNA: structural elements of the internal ribosomal entry site and involvement of a cellular 57-kD RNA-binding protein..

S K Jang and E Wimmer (1990)
Genes & Dev. 4, 1560-1572
 |  Abstract »  |  PDF »

Sindbis virus: an efficient, broad host range vector for gene expression in animal cells.

C Xiong, R Levis, P Shen, S Schlesinger, C. Rice, and H. Huang (1989)
Science 243, 1188-1191
 |  Abstract »  |  PDF »

New Concepts for Dealing with the Evolution of Nucleic Acids.

M. Eigen (1987)
Cold Spring Harb Symp Quant Biol 52, 307-320
 |  Abstract »  |  PDF »

Genetic Error and Genome Design.

D.C. Reanney (1987)
Cold Spring Harb Symp Quant Biol 52, 751-757
 |  Abstract »  |  PDF »

Genetic variation in HTLV-III/LAV over time in patients with AIDS or at risk for AIDS.

B. Hahn, G. Shaw, M. Taylor, R. Redfield, P. Markham, S. Salahuddin, F Wong-Staal, R. Gallo, E. Parks, and W. Parks (1986)
Science 232, 1548-1553
 |  Abstract »  |  PDF »

Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene.

D. Buonagurio, S Nakada, J. Parvin, M Krystal, P Palese, and W. Fitch (1986)
Science 232, 980-982
 |  Abstract »  |  PDF »

Measles virus matrix protein synthesized in a subacute sclerosing panencephalitis cell line.

R. Sheppard, C. Raine, M. Bornstein, and S. Udem (1985)
Science 228, 1219-1221
 |  Abstract »  |  PDF »

RNA virus error catastrophe: Direct molecular test by using ribavirin.

S. Crotty, C. E. Cameron, and R. Andino (2001)
PNAS 98, 6895-6900
 |  Abstract »  |  Full Text »  |  PDF »

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