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Published Online May 13, 2003 Science
DOI: 10.1126/science.1085658
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Reports
Submitted on April 14, 2003
Accepted on May 12, 2003
Coronavirus Main Proteinase (3CLpro) Structure: Basis for Design of Anti-SARS Drugs
Kanchan Anand 1,
John Ziebuhr 2,
Parvesh Wadhwani 3,
Jeroen R. Mesters 1,
Rolf Hilgenfeld 4*
1 Institute of Biochemistry, University of Lübeck, D-23538 Lübeck, Germany; Institute of Molecular Biotechnology, D-07745 Jena, Germany.
2 Institute of Virology and Immunology, University of Würzburg, D-97078 Würzburg, Germany.
3 Institute of Molecular Biology, University of Jena, D-07745 Jena, Germany.
4 Institute of Biochemistry, University of Lübeck, D-23538 Lübeck, Germany; Institute of Molecular Biotechnology, D-07745 Jena, Germany; Address for correspondence: Institute of Biochemistry, University of Lübeck, Ratzeburger Allee 160, D-23538 Lübeck, Germany.
* To whom correspondence should be addressed. E-mail: hilgenfeld{at}biochem.uni-luebeck.de.
A novel coronavirus has been identified as the causative agent of severe acute respiratory syndrome (SARS). The viral main proteinase (Mpro, also called 3CLpro), controlling the activities of the coronavirus replication complex, represents an attractive target for therapy. We determined crystal structures for human coronavirus (strain 229E) Mpro and for an inhibitor complex of porcine coronavirus (transmissible gastroenteritis virus, TGEV) Mpro, and constructed a homology model for SARS coronavirus (SARS-CoV) Mpro. The structures reveal a remarkable degree of conservation of the substrate-binding sites, which is further supported by recombinant SARS-CoV Mpro-mediated cleavage of a TGEV Mpro substrate. Molecular modeling suggests that available rhinovirus 3Cpro inhibitors may be modified to make them useful for SARS therapy.
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| Full Text »
| PDF »
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| Full Text »
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| Abstract »
| Full Text »
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| Abstract »
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| Abstract »
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| Abstract »
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- K. A. Ivanov, T. Hertzig, M. Rozanov, S. Bayer, V. Thiel, A. E. Gorbalenya, and J. Ziebuhr (2004)
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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- B. C. Fielding, Y.-J. Tan, S. Shuo, T. H. P. Tan, E.-E. Ooi, S. G. Lim, W. Hong, and P.-Y. Goh (2004)
J. Virol.
78, 7311-7318
| Abstract »
| Full Text »
| PDF »
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- K. A. Ivanov and J. Ziebuhr (2004)
J. Virol.
78, 7833-7838
| Abstract »
| Full Text »
| PDF »
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- C.-Y. Wu, J.-T. Jan, S.-H. Ma, C.-J. Kuo, H.-F. Juan, Y.-S. E. Cheng, H.-H. Hsu, H.-C. Huang, D. Wu, A. Brik, et al. (2004)
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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- T. Hertzig, E. Scandella, B. Schelle, J. Ziebuhr, S. G. Siddell, B. Ludewig, and V. Thiel (2004)
J. Gen. Virol.
85, 1717-1725
| Abstract »
| Full Text »
| PDF »
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- K. A. Ivanov, V. Thiel, J. C. Dobbe, Y. van der Meer, E. J. Snijder, and J. Ziebuhr (2004)
J. Virol.
78, 5619-5632
| Abstract »
| Full Text »
| PDF »
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- X. S. Puente and C. Lopez-Otin (2004)
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| Abstract »
| Full Text »
| PDF »
- Biosynthesis, Purification, and Substrate Specificity of Severe Acute Respiratory Syndrome Coronavirus 3C-like Proteinase.
- K. Fan, P. Wei, Q. Feng, S. Chen, C. Huang, L. Ma, B. Lai, J. Pei, Y. Liu, J. Chen, et al. (2004)
J. Biol. Chem.
279, 1637-1642
| Abstract »
| Full Text »
| PDF »
- Mosaic Evolution of the Severe Acute Respiratory Syndrome Coronavirus.
- J. Stavrinides and D. S. Guttman (2004)
J. Virol.
78, 76-82
| Abstract »
| Full Text »
| PDF »
- Detection of SARS Coronavirus in Patients with Severe Acute Respiratory Syndrome by Conventional and Real-Time Quantitative Reverse Transcription-PCR Assays.
- L. L.M. Poon, K. H. Chan, O. K. Wong, T. K.W. Cheung, I. Ng, B. Zheng, W. H. Seto, K. Y. Yuen, Y. Guan, and J. S.M. Peiris (2004)
Clin. Chem.
50, 67-72
| Abstract »
| Full Text »
| PDF »
- The Severe Acute Respiratory Syndrome.
- J. S.M. Peiris, K. Y. Yuen, A. D.M.E. Osterhaus, and K. Stohr (2003)
N. Engl. J. Med.
349, 2431-2441
| Full Text »
| PDF »
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- H. Yang, M. Yang, Y. Ding, Y. Liu, Z. Lou, Z. Zhou, L. Sun, L. Mo, S. Ye, H. Pang, et al. (2003)
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100, 13190-13195
| Abstract »
| Full Text »
| PDF »
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- B. Yount, K. M. Curtis, E. A. Fritz, L. E. Hensley, P. B. Jahrling, E. Prentice, M. R. Denison, T. W. Geisbert, and R. S. Baric (2003)
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100, 12995-13000
| Abstract »
| Full Text »
| PDF »
- The Severe Acute Respiratory Syndrome (SARS) Coronavirus NTPase/Helicase Belongs to a Distinct Class of 5' to 3' Viral Helicases.
- J. A. Tanner, R. M. Watt, Y.-B. Chai, L.-Y. Lu, M. C. Lin, J. S. M. Peiris, L. L. M. Poon, H.-F. Kung, and J.-D. Huang (2003)
J. Biol. Chem.
278, 39578-39582
| Abstract »
| Full Text »
| PDF »
- Mechanisms and enzymes involved in SARS coronavirus genome expression.
- V. Thiel, K. A. Ivanov, A. Putics, T. Hertzig, B. Schelle, S. Bayer, B. Weissbrich, E. J. Snijder, H. Rabenau, H. W. Doerr, et al. (2003)
J. Gen. Virol.
84, 2305-2315
| Abstract »
| Full Text »
| PDF »
- Severe acute respiratory syndrome (SARS): breath-taking progress.
- P. M. Hawkey, S. Bhagani, and S. H. Gillespie (2003)
J. Med. Microbiol.
52, 609-613
| Abstract »
| Full Text »
| PDF »
- Crystallization of Ideas for Anti-SARS Drugs.
- (2003)
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